Gene detail

Detail information of GWHGAAZE031795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009765899.1	0	PREDICTED: protein ELC-like [Nicotiana sylvestris]
Swissprot	tr\|Q9LHG8\|ELC_ARATH	1E-165	Protein ELC
trEMBL	tr\|F6GWC1\|F6GWC1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44284.1}
TAIR10	AT3G12400.1	2E-66	Ubiquitin-conjugating enzyme/RWD-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65002908	65004167	+
GWHAAZE00000009	mRNA	65002908	65004167	+
GWHAAZE00000009	exon	65002908	65004167	+
GWHAAZE00000009	CDS	65002908	65004167	+

Transcript Sequence
>GWHTAAZE031833 ATGGTTCCTCCACCAGGCTCCCCATCTCCACCCCCGAACTCCCAATTCACCCAACAATTCCTCAGCAGTGTCCTCTCTCAGCGTGGCCCATCAGCCCTCCCTTATACTGAAGATGTCAAATGGCTTATCCGTCAACATCTCCTCTCTCTCAATGATGCTTACCCTTCTCTCCAACCCAAAACTGCCACTTTCACCCACAACGATGGTCGCACTGTCAACCTCCTACAGGCGGATGGCACCGTTCCGATGATCTTCCAAGATGTCACCTACAATATCCCCATAGTTATGTGGCTGATGGAATCATACCCACGCCATGCTCCTCTCGTGTTTGTCAACCCCACTCGCGATATGATAATCAAGCGCCCCCACTCCTTTGTTAACCCTTCTGGTATGGTTTCAATTCCTTACCTCCAGAATTGGATCTATCCTAGCTCCAATTTGGTTGATTTGGCTCGTAATTTGAGCCACTTCTTTGGCCGTGATCCACCGCTCTACTCCCAGCGCAGACCCAATCCAAACCCAAATCCCAATCCCAATCCTAACCCTAATTATGTTCCCCCAAATCATGGGGTGATTTCGTCGAATTCAAGTTCGGTGGGCTCTTCTAGGCCGGCTATTCCACCAAGGAATTACCCTCCGTCGCCGTATGGGAGTGGCAGCAGCAGCGGGAGGATTCAGGTTCAACCGCCAGCGGCGCGGGCAGAGGATCCAGCTGAGGTCTTTAAGCGGAATGCGATAAACAAGCTAGTGGAGAGCGTGCATAGTGATATTGGGGTCATGAGGAAGAATAGGGAGGCTGAAATGGAAGGTTTATTTAATGCACAGGCAGTGTTGAGGCAACGAGAGGATCAAATCTCGAAAGGATTGAGAGAGATGAATAATGAGAAAGAGGGGTTAGAACAGCAATTACAAATGGTTCTGATGAACAGTGATGTATTGGAGGGTTGGCTGAGAGATAATGAGGGTAAGATGGTTAATATGGGGAATATGGATGTGGATGAAATTTTTGATCATTGTGATCCTCTTTCAAAACAGATGCTTGATTCTACAGCCTCTGATTTGGCTATAGAAGATGTGGTTTATGCATTAGATAAGGCGGCACAAGAAGGGTCGATACCGTTTGATCAGTACTTGAGGAACGTGAGGTTGTTGTCTAGAGAGCAGTTCTTTCACCGGGCCACTTCTTCAAAAGTCAGGGCGGCTCAGATGCAGGCACAGGTTACTAATATGGCTGCTAGAATGTCACAATATGTAGGCTGA

Network for GWHGAAZE031795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05743.14	UEV	44	164	6.10E-37
PF09454.11	Vps23_core	334	397	5.30E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12183	TSG101, STP22, VPS23	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0006464	biological_process	cellular protein modification process
GO:0015031	biological_process	protein transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.967
	SRR3591706	second leaf	16.809
	SRR3591707	mature leaf	19.650
	SRR3591708	Shoot apex	21.103
	SRR3591709	Stem	36.960
	SRR3591710	White floral bud	43.450
	SRR3591711	White flower	47.609
	SRR3591712	Green floral bud	36.815
	SRR3591713	Yellow flower	45.153
SRP173429	SRR8316895	Juvenile bud stage	25.802
	SRR8316896	Juvenile bud stage	31.682
	SRR8316897	Juvenile bud stage	18.331
	SRR8316894	Third green stage	11.790
	SRR8316900	Third green stage	29.212
	SRR8316901	Third green stage	32.781
	SRR8316898	Complete white stage	15.148
	SRR8316899	Complete white stage	48.531
	SRR8316903	Complete white stage	31.897
	SRR8316902	Silver flowering stage	22.537
	SRR8316904	Silver flowering stage	24.876
	SRR8316905	Silver flowering stage	14.443
	SRR8316906	Gold flowering stage	46.483
	SRR8316907	Gold flowering stage	44.019
	SRR8316908	Gold flowering stage	48.163
SRP132670	SRR6706286	Control	38.930
	SRR6706287	Light intensity 50%	37.653
	SRR6706288	Light intensity 20%	34.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.202
	CNS0095593	Slightly white alabastrum(diploid) 2	22.386
	CNS0095594	Slightly white alabastrum(diploid) 3	22.553
	CNS0095595	Whole white alabastrum(diploid) 2	22.671
	CNS0095596	Whole white alabastrum(diploid) 3	17.616
	CNS0095597	Whole white alabastrum(diploid) 4	21.998
	CNS0095598	Silvery flower (diploied) 1	29.400
	CNS0095599	Silvery flower (diploied) 2	30.420
	CNS0095600	Silvery flower (diploied) 3	46.929
	CNS0095601	Golden flower (diploid) 1	29.589
	CNS0095602	Golden flower (diploid) 2	47.073
	CNS0095603	Golden flower (diploid) 3	51.503
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.486
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.636
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.712
	CNS0095610	Silvery flower (tetraploid) 1	40.872
	CNS0095611	Silvery flower (tetraploid) 2	34.736
	CNS0095612	Silvery flower (tetraploid) 3	39.067
	CNS0095613	Golden flower (tetraploid) 1	29.500
	CNS0095614	Golden flower (tetraploid) 2	35.806
	CNS0095615	Golden flower (tetraploid) 3	52.257
CRA001975	CRR073297	Stem 1	28.795
	CRR073298	Stem 2	31.915
	CRR073299	Stem 3	27.998
	CRR073300	Leaf 1	36.170
	CRR073301	Leaf 2	41.414
	CRR073302	Leaf 3	21.984
	CRR073303	Juvenile bud 1	26.113
	CRR073304	Juvenile bud 2	37.458
	CRR073305	Juvenile bud 3	50.340
	CRR073306	Third green 1	40.768
	CRR073307	Third green 2	31.973
	CRR073308	Third green 3	39.865
	CRR073309	Second white 1	38.375
	CRR073310	Second white 2	33.570
	CRR073311	Second white 3	39.520
	CRR073312	Silver flowering 1	53.849
	CRR073313	Silver flowering 2	59.761
	CRR073314	Silver flowering 3	56.035
	CRR073315	Gold flowering 1	22.630
	CRR073316	Gold flowering 2	39.631
	CRR073317	Gold flowering 3	29.029
	CRR073318	Tawny withering 1	33.766
	CRR073319	Tawny withering 2	30.394
	CRR073320	Tawny withering 3	33.038