Gene detail

Detail information of GWHGAAZE031809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP40593.1	3.6263E-105	hypothetical protein JCGZ_24592 [Jatropha curcas]
trEMBL	tr\|A0A067L028\|A0A067L028_JATCU	1E-105	Uncharacterized protein {ECO:0000313\|EMBL:KDP40593.1}
TAIR10	AT5G07900.1	9E-41	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65236486	65237763	-
GWHAAZE00000009	mRNA	65236486	65237763	-
GWHAAZE00000009	exon	65237664	65237763	-
GWHAAZE00000009	exon	65236486	65237612	-
GWHAAZE00000009	CDS	65237664	65237763	-
GWHAAZE00000009	CDS	65236486	65237612	-

Transcript Sequence
>GWHTAAZE031847 ATGGCCAATCTCACTCTTCAGACATCATTATTCCTCTTCTCTTCTTATTTGCCCTATCAATTTCTCAGAATCACACCACAGACCTCAACAACTATTCCTCGCCAAAGAAAACAATTCCTTGTAATTGCACGTTCAGATAAATCATCATCACCATTATTGTCATTGTCATCTTTCACTGTTGAATTCCTCGTGAATTCATGTGGGCTTCCCTTAGAAGATGCCCTTTCAGCTTCCAAAAAGCTCCAATTGAAACAAAACAATTCCCAAAAATATGAATCTGTGTTGCTCCTTTTGAGATCCTTTCATTTCTCTGATACCCACATCACCAAACTCCTCATTAAGTTCCCCAAAATCCTTCAAATGAAGGTTAATAATGTTACGCCTAAATTAGAGTACCTCAGGGATAATGGGTTTTCGGGTCCGCTCCTTCCGGACCTAATTGTATCAAATCTGGGTTTTTTGACCGGAAGCTTGAATCGCAGCATAAAACCAACACTGGAATTCCTCAAGAAATATTTACAGACGAATGACAAAGTTGTTTTTGCTGCTAAACGCACTTCTAGGCTTCGGACAACTGATTTGAAGGGAACTACGGAGCGGAATATCGAGTTCTTGTTGGGTGAAGGGATGACTGCTACCGGTATTGAGACATTGGTTTTGTTGCAGGCGAGAACTTTGGTACACAGGCTTGATAGAATTGTCTATGCAGTTAGGACTGTCAAAGAATGGGGGCTCGACCCTACTACTCCTAAGTGTGTAGAAGCTATTAGAGTCTTGCTCTCAATGAACAATTCAACATGGAATCGAAAACTGCATTTGTTCAAGAGTTTGGGTTGGTCTGAGGAAGAGATTTGGTCTGTGTTTAAGCGGCAGTCAATCTGTTTAGCTCTTTCTGAGGAGAACATCAGGAGGACAATGGATTTTTATGTGAACACTATGAAATTGAAGCCGGGGGTTCTAGCATCTCATCCCAGTCTTCTTTGTTATGCACTAAATAGAAGAATTCGTCCACGCTATAATATTATACAGGTTTTGGAGTCTTGGAAGCTGCTTAAGAAGAAATTTAAGATTTCTACGTTATTTAGACTGCCTGAGAAGGTTTTCTTGGAAAAGTTTGTGGACAAGCATTTGGACCAAATTCCAAACTTGTTGGAGTTATATCGTGGTACTATCACGGTTGAGAAGATGGATCAACTAGAACCAAGTAATTTAAACGCTCTCGTGTAG

Network for GWHGAAZE031809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	81	223	4.30E-09
PF02536.15	mTERF	198	368	1.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.410
	SRR3591706	second leaf	2.856
	SRR3591707	mature leaf	2.049
	SRR3591708	Shoot apex	3.709
	SRR3591709	Stem	1.418
	SRR3591710	White floral bud	1.224
	SRR3591711	White flower	0.538
	SRR3591712	Green floral bud	1.976
	SRR3591713	Yellow flower	0.109
SRP173429	SRR8316895	Juvenile bud stage	2.798
	SRR8316896	Juvenile bud stage	5.050
	SRR8316897	Juvenile bud stage	1.320
	SRR8316894	Third green stage	2.083
	SRR8316900	Third green stage	4.553
	SRR8316901	Third green stage	4.202
	SRR8316898	Complete white stage	0.771
	SRR8316899	Complete white stage	4.479
	SRR8316903	Complete white stage	1.225
	SRR8316902	Silver flowering stage	1.362
	SRR8316904	Silver flowering stage	1.489
	SRR8316905	Silver flowering stage	0.469
	SRR8316906	Gold flowering stage	1.323
	SRR8316907	Gold flowering stage	2.164
	SRR8316908	Gold flowering stage	0.482
SRP132670	SRR6706286	Control	1.626
	SRR6706287	Light intensity 50%	1.610
	SRR6706288	Light intensity 20%	2.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.667
	CNS0095593	Slightly white alabastrum(diploid) 2	2.919
	CNS0095594	Slightly white alabastrum(diploid) 3	2.445
	CNS0095595	Whole white alabastrum(diploid) 2	4.352
	CNS0095596	Whole white alabastrum(diploid) 3	5.107
	CNS0095597	Whole white alabastrum(diploid) 4	3.767
	CNS0095598	Silvery flower (diploied) 1	1.618
	CNS0095599	Silvery flower (diploied) 2	4.187
	CNS0095600	Silvery flower (diploied) 3	1.740
	CNS0095601	Golden flower (diploid) 1	3.700
	CNS0095602	Golden flower (diploid) 2	2.478
	CNS0095603	Golden flower (diploid) 3	2.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.532
	CNS0095610	Silvery flower (tetraploid) 1	1.561
	CNS0095611	Silvery flower (tetraploid) 2	2.116
	CNS0095612	Silvery flower (tetraploid) 3	0.637
	CNS0095613	Golden flower (tetraploid) 1	0.631
	CNS0095614	Golden flower (tetraploid) 2	0.546
	CNS0095615	Golden flower (tetraploid) 3	0.201
CRA001975	CRR073297	Stem 1	2.408
	CRR073298	Stem 2	2.377
	CRR073299	Stem 3	2.140
	CRR073300	Leaf 1	3.455
	CRR073301	Leaf 2	2.387
	CRR073302	Leaf 3	3.010
	CRR073303	Juvenile bud 1	2.804
	CRR073304	Juvenile bud 2	2.719
	CRR073305	Juvenile bud 3	3.216
	CRR073306	Third green 1	0.132
	CRR073307	Third green 2	0.033
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.064
	CRR073310	Second white 2	0.100
	CRR073311	Second white 3	0.008
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.163
	CRR073315	Gold flowering 1	4.259
	CRR073316	Gold flowering 2	7.202
	CRR073317	Gold flowering 3	4.930
	CRR073318	Tawny withering 1	1.153
	CRR073319	Tawny withering 2	1.688
	CRR073320	Tawny withering 3	0.582