Gene detail

Detail information of GWHGAAZE031815

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275846.1	0	PREDICTED: transcription factor GAMYB [Vitis vinifera]
Swissprot	tr\|Q0JIC2\|GAM1_ORYSJ	2E-116	Transcription factor GAMYB
trEMBL	tr\|D7UD27\|D7UD27_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40642.3}
TAIR10	AT3G11440.1	4E-96	myb domain protein 65

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65382581	65385147	+
GWHAAZE00000009	mRNA	65382581	65385147	+
GWHAAZE00000009	exon	65382581	65382940	+
GWHAAZE00000009	exon	65383229	65384234	+
GWHAAZE00000009	exon	65384804	65385147	+
GWHAAZE00000009	CDS	65382581	65382940	+
GWHAAZE00000009	CDS	65383229	65384234	+
GWHAAZE00000009	CDS	65384804	65385147	+

Transcript Sequence
>GWHTAAZE031853 ATGAGCCACATAACGAATGAGAGTGAAGATGCGCTCTCAATGGATCAGCCCGATTCACCTCTGATGGATGAAGGAAACTGTGGAGGAAGTTCAAGTGGAGGTGTTGTTTTGAAGAAAGGGCCTTGGACATCTGCAGAAGATGCGATTTTGATTGAGTATGTCAAAAAGCATGGAGAGGGGAATTGGAATGCAGTTCAGAAACACTCAGGTCTCTTTCGTTGTGGTAAAAGCTGCCGATTGAGATGGGCAAACCACCTAAGGCCCAACTTGAAGAAAGGTGCGTTCACACCAGAGGAGGAACGACTCATTATTGAACTCCATGCCAAGATGGGTAACAAGTGGGCACGGATGGCTGCACATTTGCCTGGACGGACAGATAACGAGATAAAGAACTATTGGAATACCCGAATTAAACGACGTCAACGTGCTGGCTTACCCCTCTACCCTCCCGAAGTGTGCTTTCAAGCATTTCAAGAGAATCAACAAAACCAAAACCCTGACGGAATGCACAGTGGGGATAAAAGGTGTTATGATCTCGTTCAAACAAATTACGAGATACCTGATGTCATATTTGACAGTTTAAAGGCCAATCAAGGAGTCTTACCATATGTCCCTGATATCTCCGATATTTCTTCAAGTACGATGTTGATGAAAAATATGGGTTCTTCTCAGTTTTACAATTTAGTGCACCCGACAATTCACCGTCAAAAACGCCTTCGAGAATCACAGGCTCCTTTTGAGGCCCCACCCTTTGATCCGACGGAAGATGATAGCTGTGAAAATCAAATCCCACGATCGTTTGATTTGTTCTATTCGTTTGAACCGGATGACCCTATCACCAAGAACCTGTTGCCTTTTGGTGTAAACCAAGGTGGTCATTCCCTTTTAAATGGCAACAACTACTCTGCTTCTAAGCCCTCTTCTATGGGGGCATCGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAGCTGATTTAGTAGGTGGGGAGTGGGGCTCACCACCCCCTCCCCCTCCTTCACTTGAATCAGTGGATGCTTTTATTCAGTCTCCCCCACCTTCAGATTGTCTTTCACCGCGTAACAGTGGGCTATTAGATGCGTTACTTCACGAGGCAAAGAATCTGGGAAGTGCGAAGAATAATCTACAACCCTCTGAAAAGGGCTCGAATTCTTCTTCTACGGTCACTCCTGTTGACATTGCTACTGATAGTTCTGCCCTGAATAATATATGCTCGACAGAGTGGGAAGACTTTGGTGACCCAATTTCCCCATTGGGTAACTCTACAGCTTCGATTTTCAGCGAGTGCACTCCTATCAGTGCCACTGGAAGTTCGTTGGAGGAAGGTCACCCTGCTGATTTTCCTGGATGCAACGTAAAGTCAGATTCAGTTGACCAGGCATGGACCCTGGAAGGAGAAAAGAAAGAGAATTCCACTCCTATAGACTTTTCCAGGCCCGACACCCTTCTCGGTTCTTGTTGGGTTCAGCAGGGTGTGAAGAAAGACAATGGCATAATGAACGAAGCTATAGCAGCTCTTCTTGGTGACGGCTTAGGTAATAATAATGATTTCAAAAACACATCGTCTTCTAATGGAACTACTACTACTACTGCTACTAATACTACTTCCACCTCGAGCCCCGGTTGGGGATTTGGTGCTTGCAATTGGAATAACATGCCTCCCGTTTGCCAAATGACCGAACTTCCTTAA

Network for GWHGAAZE031815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0121

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	42	101	1.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.126
	SRR3591706	second leaf	2.760
	SRR3591707	mature leaf	3.305
	SRR3591708	Shoot apex	5.410
	SRR3591709	Stem	9.468
	SRR3591710	White floral bud	11.517
	SRR3591711	White flower	8.316
	SRR3591712	Green floral bud	28.173
	SRR3591713	Yellow flower	5.817
SRP173429	SRR8316895	Juvenile bud stage	15.635
	SRR8316896	Juvenile bud stage	34.852
	SRR8316897	Juvenile bud stage	12.412
	SRR8316894	Third green stage	7.781
	SRR8316900	Third green stage	18.526
	SRR8316901	Third green stage	17.851
	SRR8316898	Complete white stage	0.889
	SRR8316899	Complete white stage	3.984
	SRR8316903	Complete white stage	1.888
	SRR8316902	Silver flowering stage	1.846
	SRR8316904	Silver flowering stage	1.392
	SRR8316905	Silver flowering stage	1.057
	SRR8316906	Gold flowering stage	2.819
	SRR8316907	Gold flowering stage	2.707
	SRR8316908	Gold flowering stage	4.750
SRP132670	SRR6706286	Control	24.155
	SRR6706287	Light intensity 50%	20.926
	SRR6706288	Light intensity 20%	21.187
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.065
	CNS0095593	Slightly white alabastrum(diploid) 2	9.372
	CNS0095594	Slightly white alabastrum(diploid) 3	21.371
	CNS0095595	Whole white alabastrum(diploid) 2	11.661
	CNS0095596	Whole white alabastrum(diploid) 3	12.669
	CNS0095597	Whole white alabastrum(diploid) 4	12.863
	CNS0095598	Silvery flower (diploied) 1	3.701
	CNS0095599	Silvery flower (diploied) 2	3.530
	CNS0095600	Silvery flower (diploied) 3	4.558
	CNS0095601	Golden flower (diploid) 1	5.211
	CNS0095602	Golden flower (diploid) 2	6.684
	CNS0095603	Golden flower (diploid) 3	6.918
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.052
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.941
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.587
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.504
	CNS0095610	Silvery flower (tetraploid) 1	3.091
	CNS0095611	Silvery flower (tetraploid) 2	4.836
	CNS0095612	Silvery flower (tetraploid) 3	6.440
	CNS0095613	Golden flower (tetraploid) 1	2.981
	CNS0095614	Golden flower (tetraploid) 2	3.919
	CNS0095615	Golden flower (tetraploid) 3	4.768
CRA001975	CRR073297	Stem 1	32.840
	CRR073298	Stem 2	31.031
	CRR073299	Stem 3	33.745
	CRR073300	Leaf 1	12.091
	CRR073301	Leaf 2	13.806
	CRR073302	Leaf 3	12.955
	CRR073303	Juvenile bud 1	5.951
	CRR073304	Juvenile bud 2	5.356
	CRR073305	Juvenile bud 3	2.896
	CRR073306	Third green 1	2.571
	CRR073307	Third green 2	3.688
	CRR073308	Third green 3	3.789
	CRR073309	Second white 1	1.804
	CRR073310	Second white 2	2.527
	CRR073311	Second white 3	1.993
	CRR073312	Silver flowering 1	4.480
	CRR073313	Silver flowering 2	3.484
	CRR073314	Silver flowering 3	5.512
	CRR073315	Gold flowering 1	3.380
	CRR073316	Gold flowering 2	2.347
	CRR073317	Gold flowering 3	2.215
	CRR073318	Tawny withering 1	5.515
	CRR073319	Tawny withering 2	7.115
	CRR073320	Tawny withering 3	7.040