Detail information of GWHGAAZE031818


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652129.14.35677E-14PREDICTED: protein PALE CRESS, chloroplastic isoform X3 [Vitis vinifera]
Swissprottr|Q39089|PAC_ARATH5E-11Protein PALE CRESS, chloroplastic (Precursor)
trEMBLtr|D7TPC4|D7TPC4_VITVI2E-14Putative uncharacterized protein {ECO:0000313|EMBL:CBI32347.3}
TAIR10AT2G48120.20.000000004pale cress protein (PAC)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6542091865421058+
GWHAAZE00000009mRNA6542091865421058+
GWHAAZE00000009exon6542091865421058+
GWHAAZE00000009CDS6542091865421058+
Transcript Sequence

Network for GWHGAAZE031818

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0172


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.258
SRR3591706second leaf5.750
SRR3591707mature leaf6.136
SRR3591708Shoot apex10.777
SRR3591709Stem5.989
SRR3591710White floral bud14.493
SRR3591711White flower19.064
SRR3591712Green floral bud9.225
SRR3591713Yellow flower26.355
SRP173429 SRR8316895Juvenile bud stage 0.294
SRR8316896Juvenile bud stage 0.252
SRR8316897Juvenile bud stage 0.122
SRR8316894Third green stage 0.173
SRR8316900Third green stage 0.198
SRR8316901Third green stage 0.991
SRR8316898Complete white stage 0.093
SRR8316899Complete white stage 0.596
SRR8316903Complete white stage 1.483
SRR8316902Silver flowering stage0.672
SRR8316904Silver flowering stage0.606
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.575
SRR8316907Gold flowering stage 1.090
SRR8316908Gold flowering stage 0.186
SRP132670SRR6706286Control0.148
SRR6706287Light intensity 50%0.073
SRR6706288Light intensity 20%0.158
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.061
CNS0095593Slightly white alabastrum(diploid) 20.244
CNS0095594Slightly white alabastrum(diploid) 30.078
CNS0095595Whole white alabastrum(diploid) 20.465
CNS0095596Whole white alabastrum(diploid) 30.354
CNS0095597Whole white alabastrum(diploid) 40.895
CNS0095598Silvery flower (diploied) 10.289
CNS0095599Silvery flower (diploied) 20.112
CNS0095600Silvery flower (diploied) 30.428
CNS0095601Golden flower (diploid) 10.080
CNS0095602Golden flower (diploid) 20.140
CNS0095603Golden flower (diploid) 30.053
CNS0095604Slightly white alabastrum(tetraploid) 12.923
CNS0095605Slightly white alabastrum(tetraploid) 21.734
CNS0095606Slightly white alabastrum(tetraploid) 33.834
CNS0095607Whole white alabastrum(tetraploid) 11.102
CNS0095608Whole white alabastrum(tetraploid) 21.719
CNS0095609Whole white alabastrum(tetraploid) 34.906
CNS0095610Silvery flower (tetraploid) 19.952
CNS0095611Silvery flower (tetraploid) 26.152
CNS0095612Silvery flower (tetraploid) 38.726
CNS0095613Golden flower (tetraploid) 110.465
CNS0095614Golden flower (tetraploid) 213.448
CNS0095615Golden flower (tetraploid) 36.076
CRA001975CRR073297Stem 10.480
CRR073298Stem 20.621
CRR073299Stem 30.431
CRR073300Leaf 10.172
CRR073301Leaf 20.322
CRR073302Leaf 30.338
CRR073303Juvenile bud 10.719
CRR073304Juvenile bud 20.628
CRR073305Juvenile bud 30.542
CRR073306Third green 10.680
CRR073307Third green 20.051
CRR073308Third green 30.131
CRR073309Second white 10.924
CRR073310Second white 21.175
CRR073311Second white 30.154
CRR073312Silver flowering 10.150
CRR073313Silver flowering 20.284
CRR073314Silver flowering 30.404
CRR073315Gold flowering 10.338
CRR073316Gold flowering 20.622
CRR073317Gold flowering 30.279
CRR073318Tawny withering 10.127
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.043