Detail information of GWHGAAZE031825


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645607.10PREDICTED: F-box protein At3g54460 isoform X1 [Vitis vinifera]
COGYP_630479.11E-14SNF2/helicase domain-containing protein
Swissprottr|Q9M1I1|FB304_ARATH0F-box protein At3g54460
trEMBLtr|F6I5R7|F6I5R7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62285.1}
TAIR10AT3G54460.10SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6549817165504256-
GWHAAZE00000009mRNA6549817165504256-
GWHAAZE00000009exon6549817165498317-
GWHAAZE00000009exon6549882465498938-
GWHAAZE00000009exon6549918865499318-
GWHAAZE00000009exon6549940565499464-
GWHAAZE00000009exon6550015265500409-
GWHAAZE00000009exon6550077565500994-
GWHAAZE00000009exon6550170565504256-
GWHAAZE00000009CDS6550170565504256-
GWHAAZE00000009CDS6550077565500994-
GWHAAZE00000009CDS6550015265500409-
GWHAAZE00000009CDS6549940565499464-
GWHAAZE00000009CDS6549918865499318-
GWHAAZE00000009CDS6549882465498938-
GWHAAZE00000009CDS6549817165498317-
Transcript Sequence

Network for GWHGAAZE031825

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N1357696.10E-94
PF07496.16zf-CW3734164.10E-12
PF00271.32Helicase_C99110877.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.525
SRR3591706second leaf11.834
SRR3591707mature leaf13.935
SRR3591708Shoot apex15.559
SRR3591709Stem16.381
SRR3591710White floral bud13.306
SRR3591711White flower20.103
SRR3591712Green floral bud15.132
SRR3591713Yellow flower14.413
SRP173429 SRR8316895Juvenile bud stage 8.472
SRR8316896Juvenile bud stage 11.499
SRR8316897Juvenile bud stage 5.465
SRR8316894Third green stage 5.503
SRR8316900Third green stage 11.482
SRR8316901Third green stage 11.235
SRR8316898Complete white stage 3.378
SRR8316899Complete white stage 13.031
SRR8316903Complete white stage 6.752
SRR8316902Silver flowering stage4.781
SRR8316904Silver flowering stage8.860
SRR8316905Silver flowering stage2.749
SRR8316906Gold flowering stage 10.976
SRR8316907Gold flowering stage 8.908
SRR8316908Gold flowering stage 11.718
SRP132670SRR6706286Control9.056
SRR6706287Light intensity 50%8.991
SRR6706288Light intensity 20%10.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.625
CNS0095593Slightly white alabastrum(diploid) 26.692
CNS0095594Slightly white alabastrum(diploid) 38.130
CNS0095595Whole white alabastrum(diploid) 26.535
CNS0095596Whole white alabastrum(diploid) 36.063
CNS0095597Whole white alabastrum(diploid) 47.408
CNS0095598Silvery flower (diploied) 18.759
CNS0095599Silvery flower (diploied) 27.846
CNS0095600Silvery flower (diploied) 312.590
CNS0095601Golden flower (diploid) 16.725
CNS0095602Golden flower (diploid) 213.462
CNS0095603Golden flower (diploid) 313.005
CNS0095604Slightly white alabastrum(tetraploid) 111.322
CNS0095605Slightly white alabastrum(tetraploid) 28.041
CNS0095606Slightly white alabastrum(tetraploid) 320.999
CNS0095607Whole white alabastrum(tetraploid) 18.638
CNS0095608Whole white alabastrum(tetraploid) 26.421
CNS0095609Whole white alabastrum(tetraploid) 313.318
CNS0095610Silvery flower (tetraploid) 113.921
CNS0095611Silvery flower (tetraploid) 213.605
CNS0095612Silvery flower (tetraploid) 311.001
CNS0095613Golden flower (tetraploid) 16.086
CNS0095614Golden flower (tetraploid) 212.541
CNS0095615Golden flower (tetraploid) 312.842
CRA001975CRR073297Stem 111.468
CRR073298Stem 29.635
CRR073299Stem 39.269
CRR073300Leaf 17.730
CRR073301Leaf 28.147
CRR073302Leaf 36.149
CRR073303Juvenile bud 16.297
CRR073304Juvenile bud 23.306
CRR073305Juvenile bud 38.636
CRR073306Third green 12.892
CRR073307Third green 22.879
CRR073308Third green 33.597
CRR073309Second white 15.469
CRR073310Second white 26.559
CRR073311Second white 37.376
CRR073312Silver flowering 16.434
CRR073313Silver flowering 26.156
CRR073314Silver flowering 34.796
CRR073315Gold flowering 14.427
CRR073316Gold flowering 27.404
CRR073317Gold flowering 33.355
CRR073318Tawny withering 16.484
CRR073319Tawny withering 24.879
CRR073320Tawny withering 35.403