Detail information of GWHGAAZE031828


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008246064.16.6961E-117PREDICTED: translation initiation factor eIF-2B subunit beta-like [Prunus mume]
trEMBLtr|A0A068VC19|A0A068VC19_COFCA6E-114Coffea canephora DH200=94 genomic scaffold, scaffold_215 {ECO:0000313|EMBL:CDP18132.1}
TAIR10AT3G07300.28E-56NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6553555665539362+
GWHAAZE00000009mRNA6553555665539362+
GWHAAZE00000009exon6553555665535608+
GWHAAZE00000009exon6553575365535907+
GWHAAZE00000009exon6553702265537309+
GWHAAZE00000009exon6553921165539362+
GWHAAZE00000009CDS6553555665535608+
GWHAAZE00000009CDS6553575365535907+
GWHAAZE00000009CDS6553702265537309+
GWHAAZE00000009CDS6553921165539362+
Transcript Sequence

Network for GWHGAAZE031828

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01008.18IF-2B192091.90E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03754EIF2B2 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0044237biological_processcellular metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.095
SRR3591706second leaf17.213
SRR3591707mature leaf15.042
SRR3591708Shoot apex21.689
SRR3591709Stem18.459
SRR3591710White floral bud23.900
SRR3591711White flower25.624
SRR3591712Green floral bud19.627
SRR3591713Yellow flower25.042
SRP173429 SRR8316895Juvenile bud stage 13.236
SRR8316896Juvenile bud stage 17.562
SRR8316897Juvenile bud stage 11.029
SRR8316894Third green stage 8.510
SRR8316900Third green stage 20.906
SRR8316901Third green stage 18.936
SRR8316898Complete white stage 10.986
SRR8316899Complete white stage 28.077
SRR8316903Complete white stage 17.944
SRR8316902Silver flowering stage10.835
SRR8316904Silver flowering stage18.541
SRR8316905Silver flowering stage6.407
SRR8316906Gold flowering stage 30.934
SRR8316907Gold flowering stage 22.609
SRR8316908Gold flowering stage 30.495
SRP132670SRR6706286Control34.101
SRR6706287Light intensity 50%29.466
SRR6706288Light intensity 20%30.292
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.393
CNS0095593Slightly white alabastrum(diploid) 210.204
CNS0095594Slightly white alabastrum(diploid) 38.753
CNS0095595Whole white alabastrum(diploid) 26.792
CNS0095596Whole white alabastrum(diploid) 37.554
CNS0095597Whole white alabastrum(diploid) 45.315
CNS0095598Silvery flower (diploied) 113.749
CNS0095599Silvery flower (diploied) 210.684
CNS0095600Silvery flower (diploied) 322.226
CNS0095601Golden flower (diploid) 111.571
CNS0095602Golden flower (diploid) 222.965
CNS0095603Golden flower (diploid) 322.075
CNS0095604Slightly white alabastrum(tetraploid) 111.918
CNS0095605Slightly white alabastrum(tetraploid) 28.529
CNS0095606Slightly white alabastrum(tetraploid) 323.817
CNS0095607Whole white alabastrum(tetraploid) 15.557
CNS0095608Whole white alabastrum(tetraploid) 26.368
CNS0095609Whole white alabastrum(tetraploid) 316.272
CNS0095610Silvery flower (tetraploid) 126.423
CNS0095611Silvery flower (tetraploid) 228.423
CNS0095612Silvery flower (tetraploid) 322.371
CNS0095613Golden flower (tetraploid) 112.410
CNS0095614Golden flower (tetraploid) 226.094
CNS0095615Golden flower (tetraploid) 320.778
CRA001975CRR073297Stem 117.252
CRR073298Stem 216.014
CRR073299Stem 321.169
CRR073300Leaf 116.733
CRR073301Leaf 220.482
CRR073302Leaf 316.535
CRR073303Juvenile bud 116.315
CRR073304Juvenile bud 212.022
CRR073305Juvenile bud 316.698
CRR073306Third green 18.922
CRR073307Third green 28.001
CRR073308Third green 39.401
CRR073309Second white 111.287
CRR073310Second white 211.765
CRR073311Second white 39.157
CRR073312Silver flowering 19.273
CRR073313Silver flowering 211.441
CRR073314Silver flowering 38.216
CRR073315Gold flowering 16.256
CRR073316Gold flowering 27.574
CRR073317Gold flowering 310.210
CRR073318Tawny withering 113.988
CRR073319Tawny withering 215.737
CRR073320Tawny withering 313.217