Gene detail

Detail information of GWHGAAZE031829

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272876.2	3.9131E-139	PREDICTED: translation initiation factor eIF-2B subunit beta [Vitis vinifera]
COG	NP_070861.1	1E-25	translation initiation factor IF-2B subunit delta
trEMBL	tr\|D7TXB7\|D7TXB7_VITVI	1E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35142.3}
TAIR10	AT3G07300.2	6E-105	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65548859	65551601	+
GWHAAZE00000009	mRNA	65548859	65551601	+
GWHAAZE00000009	exon	65548859	65548977	+
GWHAAZE00000009	exon	65549070	65549172	+
GWHAAZE00000009	exon	65549270	65549395	+
GWHAAZE00000009	exon	65551067	65551260	+
GWHAAZE00000009	exon	65551511	65551601	+
GWHAAZE00000009	CDS	65548859	65548977	+
GWHAAZE00000009	CDS	65549070	65549172	+
GWHAAZE00000009	CDS	65549270	65549395	+
GWHAAZE00000009	CDS	65551067	65551260	+
GWHAAZE00000009	CDS	65551511	65551601	+

Transcript Sequence
>GWHTAAZE031867 ATGCTTTTCAGTGAGGTAATATTAACTCTAGGGAGTTCAAGAACTGTAATCGAATTTCTTTGTGCTGCCAAGGAGAAGAAAAGATCATTCCGAGTGTTTGTTGCAGAGGGAGCCCCAAGATATCAGGGGCATATTCTTGCAAAGGAATTGGTTGCAAGAGGACTACAAACCACTATAATTACTGATTCTGCAGTTTTTGCTATGATTTCACGTGTGAATATGGTAATTGTTGGAGCTCATTCTGTCATGGCCAATGGTGGGGTTATAGCACCTGTTGGATTGAACATGGTTGCACTAGCTGCTCAACGGCATGCAGTCCCTTTTGTGGTACTTGCTGGAATTCACAAGTTGTGCCCCTTGTATCCCCACAATCCAGAGGTATTACTAAATGAGCTCAAGTCCCCTTCTGAACTCCTGGATTTTGGAGAATTCTCAGATTGCATGGATTTTGGGACTGGCAGTGGTTCCCCTCTTCTTCATGTGGTCAATCCTGCATTTGATTATGTCCCACCAGAGCTTGTTAATTTGTTTATTACTGACATAGGAGGGCATAACCCATCATACATGTACCGGCTTATTGCGGATTATTACTCTGGTGATGATTTGGTGTTGCAGCAGAAACCTGTTTCTTGA

Network for GWHGAAZE031829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01008.18	IF-2B	5	186	3.70E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03754	EIF2B2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0044237	biological_process	cellular metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.600
	SRR3591706	second leaf	21.513
	SRR3591707	mature leaf	17.624
	SRR3591708	Shoot apex	27.534
	SRR3591709	Stem	21.042
	SRR3591710	White floral bud	24.663
	SRR3591711	White flower	28.747
	SRR3591712	Green floral bud	25.417
	SRR3591713	Yellow flower	28.944
SRP173429	SRR8316895	Juvenile bud stage	16.129
	SRR8316896	Juvenile bud stage	21.042
	SRR8316897	Juvenile bud stage	10.485
	SRR8316894	Third green stage	7.806
	SRR8316900	Third green stage	21.374
	SRR8316901	Third green stage	24.407
	SRR8316898	Complete white stage	9.455
	SRR8316899	Complete white stage	31.680
	SRR8316903	Complete white stage	16.157
	SRR8316902	Silver flowering stage	12.154
	SRR8316904	Silver flowering stage	16.213
	SRR8316905	Silver flowering stage	5.401
	SRR8316906	Gold flowering stage	25.325
	SRR8316907	Gold flowering stage	22.181
	SRR8316908	Gold flowering stage	24.675
SRP132670	SRR6706286	Control	10.921
	SRR6706287	Light intensity 50%	8.813
	SRR6706288	Light intensity 20%	9.340
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.555
	CNS0095593	Slightly white alabastrum(diploid) 2	14.673
	CNS0095594	Slightly white alabastrum(diploid) 3	17.955
	CNS0095595	Whole white alabastrum(diploid) 2	14.114
	CNS0095596	Whole white alabastrum(diploid) 3	11.959
	CNS0095597	Whole white alabastrum(diploid) 4	13.287
	CNS0095598	Silvery flower (diploied) 1	16.402
	CNS0095599	Silvery flower (diploied) 2	14.861
	CNS0095600	Silvery flower (diploied) 3	25.453
	CNS0095601	Golden flower (diploid) 1	17.886
	CNS0095602	Golden flower (diploid) 2	18.986
	CNS0095603	Golden flower (diploid) 3	20.153
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.593
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.287
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.327
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.692
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.539
	CNS0095610	Silvery flower (tetraploid) 1	26.319
	CNS0095611	Silvery flower (tetraploid) 2	21.328
	CNS0095612	Silvery flower (tetraploid) 3	21.962
	CNS0095613	Golden flower (tetraploid) 1	17.635
	CNS0095614	Golden flower (tetraploid) 2	21.915
	CNS0095615	Golden flower (tetraploid) 3	18.852
CRA001975	CRR073297	Stem 1	13.047
	CRR073298	Stem 2	13.695
	CRR073299	Stem 3	14.389
	CRR073300	Leaf 1	13.690
	CRR073301	Leaf 2	12.294
	CRR073302	Leaf 3	12.788
	CRR073303	Juvenile bud 1	15.598
	CRR073304	Juvenile bud 2	12.708
	CRR073305	Juvenile bud 3	13.574
	CRR073306	Third green 1	4.789
	CRR073307	Third green 2	6.480
	CRR073308	Third green 3	8.956
	CRR073309	Second white 1	11.537
	CRR073310	Second white 2	10.131
	CRR073311	Second white 3	10.105
	CRR073312	Silver flowering 1	7.704
	CRR073313	Silver flowering 2	10.905
	CRR073314	Silver flowering 3	13.720
	CRR073315	Gold flowering 1	5.896
	CRR073316	Gold flowering 2	12.226
	CRR073317	Gold flowering 3	9.121
	CRR073318	Tawny withering 1	13.456
	CRR073319	Tawny withering 2	15.419
	CRR073320	Tawny withering 3	10.255