Gene detail

Detail information of GWHGAAZE031844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240536.1	0	PREDICTED: THO complex subunit 1, partial [Prunus mume]
Swissprot	tr\|Q93VM9\|THOC1_ARATH	2E-166	THO complex subunit 1
trEMBL	tr\|F6HVB5\|F6HVB5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58627.1}
TAIR10	AT5G09860.1	9E-136	nuclear matrix protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65807168	65816074	+
GWHAAZE00000009	mRNA	65807168	65816074	+
GWHAAZE00000009	exon	65807168	65807307	+
GWHAAZE00000009	exon	65808617	65808660	+
GWHAAZE00000009	exon	65808948	65809031	+
GWHAAZE00000009	exon	65810709	65810783	+
GWHAAZE00000009	exon	65811672	65811765	+
GWHAAZE00000009	exon	65812712	65812857	+
GWHAAZE00000009	exon	65813275	65813346	+
GWHAAZE00000009	exon	65814489	65814561	+
GWHAAZE00000009	exon	65814645	65814710	+
GWHAAZE00000009	exon	65814836	65814882	+
GWHAAZE00000009	exon	65815751	65815822	+
GWHAAZE00000009	exon	65815943	65816074	+
GWHAAZE00000009	five_prime_UTR	65807168	65807307	+
GWHAAZE00000009	five_prime_UTR	65808617	65808657	+
GWHAAZE00000009	CDS	65808658	65808660	+
GWHAAZE00000009	CDS	65808948	65809031	+
GWHAAZE00000009	CDS	65810709	65810783	+
GWHAAZE00000009	CDS	65811672	65811765	+
GWHAAZE00000009	CDS	65812712	65812857	+
GWHAAZE00000009	CDS	65813275	65813346	+
GWHAAZE00000009	CDS	65814489	65814561	+
GWHAAZE00000009	CDS	65814645	65814710	+
GWHAAZE00000009	CDS	65814836	65814882	+
GWHAAZE00000009	CDS	65815751	65815822	+
GWHAAZE00000009	CDS	65815943	65816074	+

Transcript Sequence
>GWHTAAZE031882 CACTTACGCTTTAAAAGCTTATATTTTCTCAGCTTTCTTCTTCCTCATTCGTTACGCCTCTTTCCACCGTCACCACAAGTACGCATCAACCAACGTTAATCTAGGGCTCTGCTTCACGCTCCCACCATCTCGATAGCCAGAACAGTTTTTGCTGTGCTGGCTGTGGTTTGACTTTTTTGATATGGATTTATTCAGGAGTGCTATATTACAACCTGGTCCTCCTGATGATTTTGCTCTTCAGACAGTGCAAGAAGCTATAAAGCCTCAGAAGCAAACAAAACTAGTGCAAGATGAGAACCAATTGTTGGAAAATATATTACGAACGCTACTTCAGGAACTGGTGTCAGCTGCGGTTCAGTCAGGAGAGAAGATTATGCAGTATGGAAAATCAATTGCCGAGGATGAAATTACGCAGGGCCAAATTCCTCGTCTTCTTGATATCGTGCTATATCTTTGCGAGAAAGAGCATGTTGAGGGTGGCATGATATTCCAGCTCTTGGAAGATTTGACAGAGATGTCTACAATGAGAAACAGCAAAGATGTCTTTGGTTATATAGAGAGTAAACAGGACATATTAGGGAAGCCAGAACTGTTTGCACGTGGAAAACTTGTGATGTTGAGAACATGCAATCAACTTCTTCGTCGTTTGTCAAAGGCAAACGATGTGGTCTTTTGTGGACGAATCATAATGTTTCTTGCTCATTTTTTCCCATTGTCAGAACGTTCAGCCGTGAATATAAAGGGTGTTTTCAACACATCAAATGAGACAAAATATGAGAGCGAGGCCCCTAATGGCATTTCTATTGATTTCAACTTCTACAAAACCTTTTGGAATTTACAGGAACATTTTTCTAGCCCTGCCTCCTTAACTCTTGCTACTACCAAGTGGCATAAATTTACTTCCAGTTTGATGGTTGTGTTGAATACCTTTGAAGCGCAGCCTCTAAGTGATGAAGAGGGTAATGCTGATAATCTTGAGGACGAGGCCGCAACTTTCAGCATAAAATATCTTACAAGCAGTAAATTGATGGGGCTGGAGGTATGA

Network for GWHGAAZE031844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11957.9	efThoc1	83	261	1.10E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12878	THOC1	Spliceosome	map03040
K12878	THOC1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.649
	SRR3591706	second leaf	14.305
	SRR3591707	mature leaf	11.307
	SRR3591708	Shoot apex	14.942
	SRR3591709	Stem	14.072
	SRR3591710	White floral bud	13.899
	SRR3591711	White flower	17.725
	SRR3591712	Green floral bud	17.394
	SRR3591713	Yellow flower	15.775
SRP173429	SRR8316895	Juvenile bud stage	12.975
	SRR8316896	Juvenile bud stage	18.522
	SRR8316897	Juvenile bud stage	10.381
	SRR8316894	Third green stage	7.965
	SRR8316900	Third green stage	14.973
	SRR8316901	Third green stage	15.126
	SRR8316898	Complete white stage	5.234
	SRR8316899	Complete white stage	19.469
	SRR8316903	Complete white stage	12.681
	SRR8316902	Silver flowering stage	6.175
	SRR8316904	Silver flowering stage	11.948
	SRR8316905	Silver flowering stage	5.502
	SRR8316906	Gold flowering stage	15.896
	SRR8316907	Gold flowering stage	16.124
	SRR8316908	Gold flowering stage	16.489
SRP132670	SRR6706286	Control	19.464
	SRR6706287	Light intensity 50%	18.750
	SRR6706288	Light intensity 20%	18.855
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.831
	CNS0095593	Slightly white alabastrum(diploid) 2	8.686
	CNS0095594	Slightly white alabastrum(diploid) 3	7.321
	CNS0095595	Whole white alabastrum(diploid) 2	6.410
	CNS0095596	Whole white alabastrum(diploid) 3	6.980
	CNS0095597	Whole white alabastrum(diploid) 4	8.511
	CNS0095598	Silvery flower (diploied) 1	11.533
	CNS0095599	Silvery flower (diploied) 2	7.111
	CNS0095600	Silvery flower (diploied) 3	13.576
	CNS0095601	Golden flower (diploid) 1	9.573
	CNS0095602	Golden flower (diploid) 2	16.258
	CNS0095603	Golden flower (diploid) 3	16.238
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.742
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.898
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.258
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.854
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.510
	CNS0095610	Silvery flower (tetraploid) 1	16.830
	CNS0095611	Silvery flower (tetraploid) 2	19.822
	CNS0095612	Silvery flower (tetraploid) 3	12.814
	CNS0095613	Golden flower (tetraploid) 1	7.892
	CNS0095614	Golden flower (tetraploid) 2	14.022
	CNS0095615	Golden flower (tetraploid) 3	13.352
CRA001975	CRR073297	Stem 1	11.044
	CRR073298	Stem 2	7.723
	CRR073299	Stem 3	8.566
	CRR073300	Leaf 1	7.568
	CRR073301	Leaf 2	5.883
	CRR073302	Leaf 3	6.893
	CRR073303	Juvenile bud 1	5.195
	CRR073304	Juvenile bud 2	3.818
	CRR073305	Juvenile bud 3	8.254
	CRR073306	Third green 1	1.685
	CRR073307	Third green 2	0.824
	CRR073308	Third green 3	2.871
	CRR073309	Second white 1	3.089
	CRR073310	Second white 2	5.134
	CRR073311	Second white 3	2.670
	CRR073312	Silver flowering 1	2.046
	CRR073313	Silver flowering 2	1.130
	CRR073314	Silver flowering 3	2.436
	CRR073315	Gold flowering 1	2.229
	CRR073316	Gold flowering 2	5.256
	CRR073317	Gold flowering 3	2.867
	CRR073318	Tawny withering 1	4.752
	CRR073319	Tawny withering 2	3.445
	CRR073320	Tawny withering 3	7.850