Gene detail

Detail information of GWHGAAZE031847

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011034701.1	4.7659E-115	PREDICTED: THO complex subunit 1-like [Populus euphratica]
Swissprot	tr\|Q93VM9\|THOC1_ARATH	3E-86	THO complex subunit 1
trEMBL	tr\|B9GLX5\|B9GLX5_POPTR	3E-115	Uncharacterized protein {ECO:0000313\|EMBL:EEE83993.1}
TAIR10	AT5G09860.2	5E-69	nuclear matrix protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65832464	65838507	+
GWHAAZE00000009	mRNA	65832464	65838507	+
GWHAAZE00000009	exon	65832464	65832480	+
GWHAAZE00000009	exon	65832625	65832691	+
GWHAAZE00000009	exon	65834767	65834838	+
GWHAAZE00000009	exon	65834996	65835046	+
GWHAAZE00000009	exon	65836801	65836860	+
GWHAAZE00000009	exon	65836949	65837098	+
GWHAAZE00000009	exon	65838220	65838507	+
GWHAAZE00000009	CDS	65832464	65832480	+
GWHAAZE00000009	CDS	65832625	65832691	+
GWHAAZE00000009	CDS	65834767	65834838	+
GWHAAZE00000009	CDS	65834996	65835046	+
GWHAAZE00000009	CDS	65836801	65836860	+
GWHAAZE00000009	CDS	65836949	65837098	+
GWHAAZE00000009	CDS	65838220	65838507	+

Transcript Sequence
>GWHTAAZE031885 ATGCTTTATGATGTTATTAGGCCACGGTGGAGATTGGGGAATAAAGAACTCTCTCAATTATGGAAATGGGCAGACCAAAATCCGAATGCTCTGACTGATCCTCAACGTGTTCGCACTCCTGCTATCACAGATTACTGGAAACCATTGGCCGAGGATATGGATGAGTCTGCTGGGATAGAAGCAGAATATCACCACAAAAATAACAAGGTTTATTGTTGGAAAGGTCTTCGATTTTCAGCCCGACAGGATTTGGATGGATTTTCCCGATTTACCGAATATGGTATTGAGGGGGTTGTACCTCTGGAACTCTTGCCACCTGATGTGCGATCCAAATATCAAGCTAAACCAAGTGATAGGTCTAAGCGTGCTAAAAAGGAGGAAACTAAGAGCGCTGCAAATCAAGCTGAAGAAAACCAGATTGCGACGCCTGCAAGTGAGGGTGATGGTGAAGGCACGAAAGTTGAGCTTGAGGGGTCGACTACAGCTCCAATGGAGACAGACACTGTGATAGCAACAGGAAGTGGCAATGGAACTCCAACTACAGAAGAGCACCACCAAAAACAAGGCAGCAACAGCTCTGACGCAGAAGGCGGCGGTCAGGAGGCAGGACAGATAATAGAAGCAGAAGCAGAAGCAGAGACCGGTGGTTTGATTGACGGTGAGACTGATGCCGAGGTTGATTTAGTTGGTTCGGATAAAATATAG

Network for GWHGAAZE031847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11957.9	efThoc1	10	121	4.30E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12878	THOC1	Spliceosome	map03040
K12878	THOC1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.577
	SRR3591706	second leaf	16.277
	SRR3591707	mature leaf	16.338
	SRR3591708	Shoot apex	28.454
	SRR3591709	Stem	24.722
	SRR3591710	White floral bud	21.069
	SRR3591711	White flower	28.483
	SRR3591712	Green floral bud	24.347
	SRR3591713	Yellow flower	17.620
SRP173429	SRR8316895	Juvenile bud stage	29.213
	SRR8316896	Juvenile bud stage	43.345
	SRR8316897	Juvenile bud stage	18.364
	SRR8316894	Third green stage	12.647
	SRR8316900	Third green stage	32.160
	SRR8316901	Third green stage	37.893
	SRR8316898	Complete white stage	11.673
	SRR8316899	Complete white stage	35.273
	SRR8316903	Complete white stage	17.716
	SRR8316902	Silver flowering stage	11.534
	SRR8316904	Silver flowering stage	11.627
	SRR8316905	Silver flowering stage	6.785
	SRR8316906	Gold flowering stage	24.323
	SRR8316907	Gold flowering stage	23.421
	SRR8316908	Gold flowering stage	26.927
SRP132670	SRR6706286	Control	34.944
	SRR6706287	Light intensity 50%	36.247
	SRR6706288	Light intensity 20%	36.283
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.421
	CNS0095593	Slightly white alabastrum(diploid) 2	39.861
	CNS0095594	Slightly white alabastrum(diploid) 3	44.704
	CNS0095595	Whole white alabastrum(diploid) 2	31.191
	CNS0095596	Whole white alabastrum(diploid) 3	31.815
	CNS0095597	Whole white alabastrum(diploid) 4	24.804
	CNS0095598	Silvery flower (diploied) 1	28.238
	CNS0095599	Silvery flower (diploied) 2	23.803
	CNS0095600	Silvery flower (diploied) 3	23.312
	CNS0095601	Golden flower (diploid) 1	32.223
	CNS0095602	Golden flower (diploid) 2	26.784
	CNS0095603	Golden flower (diploid) 3	23.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.488
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.197
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.709
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.128
	CNS0095610	Silvery flower (tetraploid) 1	29.729
	CNS0095611	Silvery flower (tetraploid) 2	30.143
	CNS0095612	Silvery flower (tetraploid) 3	26.933
	CNS0095613	Golden flower (tetraploid) 1	20.881
	CNS0095614	Golden flower (tetraploid) 2	24.832
	CNS0095615	Golden flower (tetraploid) 3	15.396
CRA001975	CRR073297	Stem 1	37.837
	CRR073298	Stem 2	39.057
	CRR073299	Stem 3	34.856
	CRR073300	Leaf 1	34.867
	CRR073301	Leaf 2	36.012
	CRR073302	Leaf 3	27.967
	CRR073303	Juvenile bud 1	28.065
	CRR073304	Juvenile bud 2	14.699
	CRR073305	Juvenile bud 3	30.762
	CRR073306	Third green 1	8.194
	CRR073307	Third green 2	8.373
	CRR073308	Third green 3	10.360
	CRR073309	Second white 1	8.590
	CRR073310	Second white 2	9.621
	CRR073311	Second white 3	8.532
	CRR073312	Silver flowering 1	6.662
	CRR073313	Silver flowering 2	3.308
	CRR073314	Silver flowering 3	4.396
	CRR073315	Gold flowering 1	9.514
	CRR073316	Gold flowering 2	18.687
	CRR073317	Gold flowering 3	11.513
	CRR073318	Tawny withering 1	29.019
	CRR073319	Tawny withering 2	32.294
	CRR073320	Tawny withering 3	27.856