Detail information of GWHGAAZE031851


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009779906.10PREDICTED: lysine histidine transporter-like 5 [Nicotiana sylvestris]
Swissprottr|Q9C9J0|LHTL5_ARATH0Lysine histidine transporter-like 5
trEMBLtr|D7MJJ1|D7MJJ1_ARALL0Putative uncharacterized protein {ECO:0000313|EMBL:EFH44961.1}
TAIR10AT1G71680.18E-133Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6588030465886546-
GWHAAZE00000009mRNA6588030465886546-
GWHAAZE00000009exon6588030465880369-
GWHAAZE00000009exon6588101365881081-
GWHAAZE00000009exon6588116465881255-
GWHAAZE00000009exon6588138765881492-
GWHAAZE00000009exon6588222065882607-
GWHAAZE00000009exon6588347965883862-
GWHAAZE00000009exon6588641365886546-
GWHAAZE00000009CDS6588641365886546-
GWHAAZE00000009CDS6588347965883862-
GWHAAZE00000009CDS6588222065882607-
GWHAAZE00000009CDS6588138765881492-
GWHAAZE00000009CDS6588116465881255-
GWHAAZE00000009CDS6588101365881081-
GWHAAZE00000009CDS6588030465880369-
Transcript Sequence

Network for GWHGAAZE031851

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0121


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans144052.40E-88
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.903
SRR3591706second leaf0.182
SRR3591707mature leaf0.200
SRR3591708Shoot apex0.583
SRR3591709Stem3.400
SRR3591710White floral bud14.045
SRR3591711White flower1.457
SRR3591712Green floral bud44.378
SRR3591713Yellow flower1.394
SRP173429 SRR8316895Juvenile bud stage 27.716
SRR8316896Juvenile bud stage 44.360
SRR8316897Juvenile bud stage 23.589
SRR8316894Third green stage 15.457
SRR8316900Third green stage 46.393
SRR8316901Third green stage 40.167
SRR8316898Complete white stage 1.099
SRR8316899Complete white stage 1.252
SRR8316903Complete white stage 0.561
SRR8316902Silver flowering stage0.510
SRR8316904Silver flowering stage1.002
SRR8316905Silver flowering stage0.757
SRR8316906Gold flowering stage 1.230
SRR8316907Gold flowering stage 1.279
SRR8316908Gold flowering stage 0.337
SRP132670SRR6706286Control50.687
SRR6706287Light intensity 50%47.021
SRR6706288Light intensity 20%50.463
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.028
CNS0095593Slightly white alabastrum(diploid) 25.313
CNS0095594Slightly white alabastrum(diploid) 329.923
CNS0095595Whole white alabastrum(diploid) 26.514
CNS0095596Whole white alabastrum(diploid) 39.459
CNS0095597Whole white alabastrum(diploid) 410.414
CNS0095598Silvery flower (diploied) 10.864
CNS0095599Silvery flower (diploied) 22.173
CNS0095600Silvery flower (diploied) 33.216
CNS0095601Golden flower (diploid) 11.289
CNS0095602Golden flower (diploid) 23.937
CNS0095603Golden flower (diploid) 32.671
CNS0095604Slightly white alabastrum(tetraploid) 17.110
CNS0095605Slightly white alabastrum(tetraploid) 29.744
CNS0095606Slightly white alabastrum(tetraploid) 30.714
CNS0095607Whole white alabastrum(tetraploid) 16.840
CNS0095608Whole white alabastrum(tetraploid) 26.471
CNS0095609Whole white alabastrum(tetraploid) 367.971
CNS0095610Silvery flower (tetraploid) 11.866
CNS0095611Silvery flower (tetraploid) 24.333
CNS0095612Silvery flower (tetraploid) 33.617
CNS0095613Golden flower (tetraploid) 12.617
CNS0095614Golden flower (tetraploid) 23.175
CNS0095615Golden flower (tetraploid) 34.693
CRA001975CRR073297Stem 155.438
CRR073298Stem 252.425
CRR073299Stem 343.470
CRR073300Leaf 18.443
CRR073301Leaf 210.133
CRR073302Leaf 321.057
CRR073303Juvenile bud 10.940
CRR073304Juvenile bud 22.023
CRR073305Juvenile bud 30.954
CRR073306Third green 10.540
CRR073307Third green 22.460
CRR073308Third green 30.772
CRR073309Second white 11.053
CRR073310Second white 20.521
CRR073311Second white 31.152
CRR073312Silver flowering 12.125
CRR073313Silver flowering 21.583
CRR073314Silver flowering 31.921
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.063
CRR073317Gold flowering 30.203
CRR073318Tawny withering 10.202
CRR073319Tawny withering 20.888
CRR073320Tawny withering 30.000