Gene detail

Detail information of GWHGAAZE031861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645598.1	0	PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like [Vitis vinifera]
COG	YP_004253406.1	4E-34	TIR protein
Swissprot	tr\|Q9SFB8\|PI5K6_ARATH	0	Phosphatidylinositol 4-phosphate 5-kinase 6
trEMBL	tr\|F6I5R1\|F6I5R1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62279.1}
TAIR10	AT3G07960.1	0	Phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66032865	66038634	+
GWHAAZE00000009	mRNA	66032865	66038634	+
GWHAAZE00000009	exon	66032865	66034018	+
GWHAAZE00000009	exon	66034366	66034533	+
GWHAAZE00000009	exon	66035995	66036160	+
GWHAAZE00000009	exon	66036500	66036613	+
GWHAAZE00000009	exon	66036698	66036891	+
GWHAAZE00000009	exon	66037153	66037295	+
GWHAAZE00000009	exon	66037631	66037709	+
GWHAAZE00000009	exon	66038352	66038634	+
GWHAAZE00000009	CDS	66032865	66034018	+
GWHAAZE00000009	CDS	66034366	66034533	+
GWHAAZE00000009	CDS	66035995	66036160	+
GWHAAZE00000009	CDS	66036500	66036613	+
GWHAAZE00000009	CDS	66036698	66036891	+
GWHAAZE00000009	CDS	66037153	66037295	+
GWHAAZE00000009	CDS	66037631	66037709	+
GWHAAZE00000009	CDS	66038352	66038634	+

Transcript Sequence
>GWHTAAZE031899 ATGAGCAAAGAACTAGGCGGAATTGTGAAAGCTTGGGAAGCAACGAAACGAAAATCACACGCGATCGCAAAGAAAAGATTCCCAACAATGTCAGTGGTGAATATCGATGAGGAGGAGGAAGCTGATGGCTCAATTGAAGTCATCCAAACAGAGAAATTCTTTTCCTCTGGTGACATCTACATTGGCCAGTGGGCGGAAAATTGCCCCCACGGTCAGGGAAAATACTTGTGGGCCGACGGATGTATGTATGTTGGTGATTGGCACAAGGGAAAAACAATGGGAAAAGGTAAGTTTAGTTGGCCCTCAGGGGCCACCTACGAAGGCGTATTCAATGACGGATATATGGATGGTGAAGGGACTTATATGGGTGTTTCAACGGAGACGTATAAAGGTACTTGGGTGATGAACAATAAGCATGGTAAAGGGGCTGCAACTTATGACAATGGAGATGTCTATGAAGGCGAGTGGCGAAAGGGAATGCAAGATGGGCAAGGGAGGTATCAATGGAGTAATGGTAACCAGTATATTGGGAATTGGAAGAACGGAAAGATAAAAGGAAATGGAACTCTAATTTGGGCTAATGGAAATCGGTACGATGGGTGTTGGGAGGATGGATTTCCTAGAGGAAATGGAACTTTTCGATGGGCAGATGGGAGTTTTTATGTGGGGGTGTGGAATAAAGACCCAAAAGACCAAACTGGGACTTATTACCCTTTGACTTCCCAATTAGGTAATTTCGACTGGGATCCTCAAGAGGTTTATTTGGTTGATTTGAACGATTGTGTCCTTTGTACTGAAGAAAAGATTGTGATATATCCTTCGCAAAAGATGGTGTTTGATTGGAGCGGTGTCGAAGGGGAGTCAGTTCATAAGAGTCATCATTTAAGGAAAGGCTCAAAAGGAAGTGATAATAATAGACCAAAGAGATTATCACTTGATGGGAGGTTGATTAATGGTGGTATTCATAGTTGGGGTTCGGATTCTCAAGTGCTTAAGGCGTATGCAGGTTCGGGTTCTGGGAGAGAGATTGATGATGACGATTTGGAATCGAGGGGAACCCCGAACCAAATACATCAAACTAAGAGACAAGGGGAAACAATTTACAAAGGACACAAGAATTATGAGCTGATGCTTAATTTGCAATTGGGAATACGACATTCAGTAGGAAGACCTGCCCCATCTCCACCTCTTGATTTGAAGCCAACAGCTTTTGATACTAAGGAGAAAATATGGACCAAATTTCCACCAGAAGGTTCCAAACATACCCCTCCTCACCAATCAGGCGAATTCAAATGGAAGGATTATTGCCCCTTGGTTTTCAGGACTCTAAGGAAATTATTTAAAGTGGATCCGGCTGATTATATGTTATCCATATGCGGGAATGATGCTCTTAGGGAGCTCTCATCCCCTGGGAAAAGTGGAAGCTTCTTTTATTTAACAAATGATGACAAATATATGATAAAAACCATGAAGAAATCTGAAGTAAAAGTTCTCAAGAGGATGCTTCCAGCTTATTACAGTCATGTTCGAGCATTCGAAGAGACTTTGGTTACAAAATTCTATGGCCTTCACTGTGTCAAGTTAGGGCCAGCTCAAAAGAAGGTGCGGTTTGTTATAATGGGAAATTTGTTTCGTACCGAGTATGCGATTCACAGACGTTTTGACTTGAAAGGATCTTCCCTTGGAAGAACAACTGATAAATCAGAAGATGAAATTGACTCGAACACAACCCTCAAGGACCTTGATCTTAATTATATCTTCCGACTACAGAAGGATTGGTTCGATGATTTTTGCAGGCAAGTTGACAAGGACTGTGACTTCCTTGAGCAAGAAAGAATTATGGATTATAGTCTTTTAATCGGTATTCATTTTCAAGAAACCTCAAACTGTAAGTCTCCAACAGCAGAGGGCCAAGCTTCAACTGCTAGTACCCCGACAGGGAATGGAGATGTTGCTGATAGTGAAGGAGCAGCTCCTCAAGTTTCTACAGCAGATACAGATCCTCCTGAGCCCCCACGGGTAACAACCGTTAAATTAGGTATGAGCATGCCTGCAAGGGCAGAGCAAACATCGAGAAGTTGCGAGACTCAACTTGTTGGCGAACCAACGGGAGAATTCTTCGAAGTCATTCTCTACTTTGGAATAATAGATATACTTCAAGATTATGACATTAGCAAGAAGCTTGAGCATGCATATAAATCAATCCAATACGACCCAACGTCAATCTCAGCAGTTGACCCTAGGCAATACTCAAGACGTTTCCGAGATTTCATATTTAAAATTTTCACAGAAGACACTTGA

Network for GWHGAAZE031861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02493.21	MORN	60	82	6.10E-06
PF02493.21	MORN	83	104	4.30E-05
PF02493.21	MORN	106	122	0.37
PF02493.21	MORN	129	151	0.0024
PF02493.21	MORN	152	173	1.20E-06
PF02493.21	MORN	175	197	5.60E-07
PF02493.21	MORN	198	219	5.40E-05
PF01504.19	PIP5K	461	761	8.80E-95

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00889	PIP5K	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		MAPK signaling pathway - yeast	map04011
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Endocytosis	map04144
		Mitophagy - yeast	map04139
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016308	molecular_function	1-phosphatidylinositol-4-phosphate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.763
	SRR3591706	second leaf	0.165
	SRR3591707	mature leaf	0.290
	SRR3591708	Shoot apex	0.525
	SRR3591709	Stem	0.922
	SRR3591710	White floral bud	9.002
	SRR3591711	White flower	4.795
	SRR3591712	Green floral bud	9.955
	SRR3591713	Yellow flower	1.652
SRP173429	SRR8316895	Juvenile bud stage	0.201
	SRR8316896	Juvenile bud stage	0.384
	SRR8316897	Juvenile bud stage	0.210
	SRR8316894	Third green stage	0.387
	SRR8316900	Third green stage	6.529
	SRR8316901	Third green stage	5.456
	SRR8316898	Complete white stage	0.491
	SRR8316899	Complete white stage	0.881
	SRR8316903	Complete white stage	0.423
	SRR8316902	Silver flowering stage	0.932
	SRR8316904	Silver flowering stage	1.670
	SRR8316905	Silver flowering stage	0.295
	SRR8316906	Gold flowering stage	1.120
	SRR8316907	Gold flowering stage	1.302
	SRR8316908	Gold flowering stage	0.748
SRP132670	SRR6706286	Control	3.472
	SRR6706287	Light intensity 50%	3.556
	SRR6706288	Light intensity 20%	2.904
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.842
	CNS0095593	Slightly white alabastrum(diploid) 2	3.187
	CNS0095594	Slightly white alabastrum(diploid) 3	1.372
	CNS0095595	Whole white alabastrum(diploid) 2	8.713
	CNS0095596	Whole white alabastrum(diploid) 3	8.667
	CNS0095597	Whole white alabastrum(diploid) 4	9.813
	CNS0095598	Silvery flower (diploied) 1	1.294
	CNS0095599	Silvery flower (diploied) 2	1.291
	CNS0095600	Silvery flower (diploied) 3	1.430
	CNS0095601	Golden flower (diploid) 1	1.172
	CNS0095602	Golden flower (diploid) 2	0.504
	CNS0095603	Golden flower (diploid) 3	0.620
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.575
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.829
	CNS0095610	Silvery flower (tetraploid) 1	3.106
	CNS0095611	Silvery flower (tetraploid) 2	1.998
	CNS0095612	Silvery flower (tetraploid) 3	6.194
	CNS0095613	Golden flower (tetraploid) 1	1.515
	CNS0095614	Golden flower (tetraploid) 2	1.495
	CNS0095615	Golden flower (tetraploid) 3	2.281
CRA001975	CRR073297	Stem 1	0.379
	CRR073298	Stem 2	0.488
	CRR073299	Stem 3	0.198
	CRR073300	Leaf 1	4.208
	CRR073301	Leaf 2	3.354
	CRR073302	Leaf 3	1.169
	CRR073303	Juvenile bud 1	3.836
	CRR073304	Juvenile bud 2	3.298
	CRR073305	Juvenile bud 3	0.331
	CRR073306	Third green 1	2.001
	CRR073307	Third green 2	2.084
	CRR073308	Third green 3	1.968
	CRR073309	Second white 1	0.880
	CRR073310	Second white 2	1.913
	CRR073311	Second white 3	1.444
	CRR073312	Silver flowering 1	1.733
	CRR073313	Silver flowering 2	2.286
	CRR073314	Silver flowering 3	1.329
	CRR073315	Gold flowering 1	0.526
	CRR073316	Gold flowering 2	0.176
	CRR073317	Gold flowering 3	0.501
	CRR073318	Tawny withering 1	1.147
	CRR073319	Tawny withering 2	2.866
	CRR073320	Tawny withering 3	1.409