Gene detail

Detail information of GWHGAAZE031875

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087395.1	0	PREDICTED: lysosomal beta glucosidase-like [Sesamum indicum]
COG	YP_003265703.1	0	glycoside hydrolase
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	3E-37	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|K4B088\|K4B088_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g097000.2.1}
TAIR10	AT5G04885.1	0	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66348605	66356312	+
GWHAAZE00000009	mRNA	66348605	66356312	+
GWHAAZE00000009	exon	66348605	66348758	+
GWHAAZE00000009	exon	66349828	66350041	+
GWHAAZE00000009	exon	66350801	66350891	+
GWHAAZE00000009	exon	66350982	66351127	+
GWHAAZE00000009	exon	66352185	66352428	+
GWHAAZE00000009	exon	66352820	66352924	+
GWHAAZE00000009	exon	66353302	66353484	+
GWHAAZE00000009	exon	66354493	66354697	+
GWHAAZE00000009	exon	66355818	66356312	+
GWHAAZE00000009	CDS	66348605	66348758	+
GWHAAZE00000009	CDS	66349828	66350041	+
GWHAAZE00000009	CDS	66350801	66350891	+
GWHAAZE00000009	CDS	66350982	66351127	+
GWHAAZE00000009	CDS	66352185	66352428	+
GWHAAZE00000009	CDS	66352820	66352924	+
GWHAAZE00000009	CDS	66353302	66353484	+
GWHAAZE00000009	CDS	66354493	66354697	+
GWHAAZE00000009	CDS	66355818	66356305	+
GWHAAZE00000009	three_prime_UTR	66356306	66356312	+

Transcript Sequence
>GWHTAAZE031913 ATGGTTAAGATTTCAGTTCCATGGTTGGGGTTTATGTTGCTGTGGTGGTCCTGCACCGCAATGGGAGATTATGTGAAGTACAAAGACCCAAATCAGCCTGTAGCTGTTCGTGTGGAAGATCTTCTCAGTCGAATGACTTTAGAAGAGAAGATTGGGAGTGTATTAAGTGGAGGGGGTAGTGCACCACTTCCACAAGCTACTGCTACAGATTGGGTCAATATGGTGAATGGGTTTCAAAAGGGATCACTATCCACTCGTTTAGGGATCCCGATGATATATGGGATTGATGCTGTTCATGGGCACAATAATGTCGTTAATGCTACAATATTTCCCCATAATGTTGGGCTTGGAGCTACCAGGCAAGTGAAGGATCCTGAACTTTTGATGAGAATTGGAGCTGCAACTGCTATTGAAGTTAGAGCTACAGGGATTACGTATGCATTTGCTCCTTGCATTGCAGTTTGCAGAGATCCGAGATGGGGTCGGTGCTATGAAAGCTATAGTGAGGATCCCAAGGTTGTTCAACAAATGACAGACATTATAATTGGATTGCAAGGAGAGATTCCAAATAGTTCGCGTAAAGGAGTTCCCTACGTTGGTGGAAAGGACAAGGTTGTAGCTTGTGCAAAGCACTTTGTGGGTGACGGTGGGACAACAAAAGGTGTGAATGAGAACAATACCCTGATTGATATGCATGGATTGCTTACCATCCACATGCCAGCCTACTATGATGCCATTATCAAGGGTGTTTCAACAGTTATGGTCTCCTACTCAAGTTGGAATGGTGAAAAAATGCATGCCAATCGCAATCTTATTACTGGATTCCTCAAAGACAACCTTAAATTCAAGGGTTTTGTTATCTCAGATTGGGAGGGGATCGACAGGATTACCTCTCCACCTCATTCAAACTACACTCACTCTGTTGAGGCTAGTATTCTTGCTGGTATTGACATGGTCATGATCCCAACAAAGTATAACGAGTTCATTAATGATCTCACTTACTTGGTGAAGAACAAGTTTATCCCGATGGATCGTATTAATGATGCTGTTGAGAGGATTTTGCTGGTTAAGTTCACCACGGGTCTGTTTGAGAACCCTCTTGCGGATCTCAGCCTAGTGGACGAGGTTGGAAATCAGGCACATAGAAACTTGGCAAGGGAAGCTGTGAGGAAATCTCTTGTGCTGCTGAAGAATGGAAAAAATGTAGTTGATCCATTGTTACCACTTCCCAAGAACGCTCCCAAAATTTTAGTTGCTGGTAGCCATGCACATAATCTTGGTTATCAATGTGGTGGGTGGACTATCACCTGGCAAGGATTCAGTGGAAATACCCAAACAAGTGGAACTACCATCCTTAATGCCATAAACTCAACAGTAGACAGAGGCACAGAAATCGTCTTCCTCGAGAACCCCGAAAGCGAATTCGTAAGGTCCAGCAACTTTGCTTATGCCATTGTCGTCGTTGGTGAGCACCCCTACACCGAGAGTGCAGGGGACAGCCCTACACTCACAATAGTAGATCCTGGCCCAAGTGTCATCACCAATGTATGTGGGGCTGTGAAGTGTGTTGTTTTAGTTATATCGGGCCGACCCGTTGTGATGGAGCCGTATATTAATTCGATCGATGCGCTAGTGGCAGCATGGTTACCTGGTACTGAAGGTCAAGGGGTGACCGATGTTTTGTTTGGGGACTATGGTTTTAGTGGAAAACTTTCGCGAACATGGTTCAAAAGCATTGATCAACTCCCCATGAATGTAGAGGATTCGCATTATGACCCACTCTTCCCCTTTGGATTTGGCCTTACAACTACATCACTGGTGGCAAGGTAAAATTTCA

Network for GWHGAAZE031875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	45	354	1.00E-64
PF01915.23	Glyco_hydro_3_C	393	602	2.60E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.680
	SRR3591706	second leaf	40.672
	SRR3591707	mature leaf	13.105
	SRR3591708	Shoot apex	54.020
	SRR3591709	Stem	22.942
	SRR3591710	White floral bud	43.371
	SRR3591711	White flower	34.428
	SRR3591712	Green floral bud	71.464
	SRR3591713	Yellow flower	23.000
SRP173429	SRR8316895	Juvenile bud stage	21.510
	SRR8316896	Juvenile bud stage	31.765
	SRR8316897	Juvenile bud stage	17.929
	SRR8316894	Third green stage	12.954
	SRR8316900	Third green stage	36.115
	SRR8316901	Third green stage	30.429
	SRR8316898	Complete white stage	9.398
	SRR8316899	Complete white stage	32.656
	SRR8316903	Complete white stage	13.539
	SRR8316902	Silver flowering stage	6.396
	SRR8316904	Silver flowering stage	8.600
	SRR8316905	Silver flowering stage	4.127
	SRR8316906	Gold flowering stage	10.001
	SRR8316907	Gold flowering stage	13.519
	SRR8316908	Gold flowering stage	13.064
SRP132670	SRR6706286	Control	28.045
	SRR6706287	Light intensity 50%	34.617
	SRR6706288	Light intensity 20%	38.445
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.849
	CNS0095593	Slightly white alabastrum(diploid) 2	35.922
	CNS0095594	Slightly white alabastrum(diploid) 3	24.052
	CNS0095595	Whole white alabastrum(diploid) 2	23.612
	CNS0095596	Whole white alabastrum(diploid) 3	24.532
	CNS0095597	Whole white alabastrum(diploid) 4	20.439
	CNS0095598	Silvery flower (diploied) 1	19.613
	CNS0095599	Silvery flower (diploied) 2	18.277
	CNS0095600	Silvery flower (diploied) 3	15.770
	CNS0095601	Golden flower (diploid) 1	13.668
	CNS0095602	Golden flower (diploid) 2	19.479
	CNS0095603	Golden flower (diploid) 3	19.883
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.811
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.782
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.938
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.235
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.061
	CNS0095610	Silvery flower (tetraploid) 1	19.854
	CNS0095611	Silvery flower (tetraploid) 2	12.873
	CNS0095612	Silvery flower (tetraploid) 3	11.307
	CNS0095613	Golden flower (tetraploid) 1	6.552
	CNS0095614	Golden flower (tetraploid) 2	16.214
	CNS0095615	Golden flower (tetraploid) 3	3.871
CRA001975	CRR073297	Stem 1	33.720
	CRR073298	Stem 2	32.840
	CRR073299	Stem 3	29.464
	CRR073300	Leaf 1	40.772
	CRR073301	Leaf 2	37.101
	CRR073302	Leaf 3	38.137
	CRR073303	Juvenile bud 1	25.622
	CRR073304	Juvenile bud 2	23.493
	CRR073305	Juvenile bud 3	26.577
	CRR073306	Third green 1	2.013
	CRR073307	Third green 2	3.550
	CRR073308	Third green 3	4.296
	CRR073309	Second white 1	4.920
	CRR073310	Second white 2	1.988
	CRR073311	Second white 3	2.655
	CRR073312	Silver flowering 1	1.394
	CRR073313	Silver flowering 2	3.064
	CRR073314	Silver flowering 3	2.583
	CRR073315	Gold flowering 1	18.687
	CRR073316	Gold flowering 2	18.543
	CRR073317	Gold flowering 3	17.850
	CRR073318	Tawny withering 1	31.397
	CRR073319	Tawny withering 2	27.821
	CRR073320	Tawny withering 3	33.948