Gene detail

Detail information of GWHGAAZE031880

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG08816.1	Beta-galactosidase [Gossypium arboreum]
COG	YP_007541815.1	beta-galactosidase
trEMBL	tr\|M5XF18\|M5XF18_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20103.1}
TAIR10	AT3G54440.1	glycoside hydrolase family 2 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66423433	66447647	+
GWHAAZE00000009	mRNA	66423433	66447647	+
GWHAAZE00000009	exon	66423433	66423562	+
GWHAAZE00000009	exon	66424587	66424826	+
GWHAAZE00000009	exon	66426526	66426675	+
GWHAAZE00000009	exon	66428088	66428166	+
GWHAAZE00000009	exon	66428258	66428327	+
GWHAAZE00000009	exon	66430828	66431016	+
GWHAAZE00000009	exon	66431669	66431734	+
GWHAAZE00000009	exon	66431832	66431903	+
GWHAAZE00000009	exon	66432105	66432335	+
GWHAAZE00000009	exon	66433199	66433405	+
GWHAAZE00000009	exon	66434113	66434419	+
GWHAAZE00000009	exon	66440956	66441115	+
GWHAAZE00000009	exon	66441226	66441334	+
GWHAAZE00000009	exon	66441923	66442058	+
GWHAAZE00000009	exon	66442346	66442401	+
GWHAAZE00000009	exon	66444067	66444189	+
GWHAAZE00000009	exon	66444866	66445534	+
GWHAAZE00000009	exon	66447474	66447647	+
GWHAAZE00000009	CDS	66423433	66423562	+
GWHAAZE00000009	CDS	66424587	66424826	+
GWHAAZE00000009	CDS	66426526	66426675	+
GWHAAZE00000009	CDS	66428088	66428166	+
GWHAAZE00000009	CDS	66428258	66428327	+
GWHAAZE00000009	CDS	66430828	66431016	+
GWHAAZE00000009	CDS	66431669	66431734	+
GWHAAZE00000009	CDS	66431832	66431903	+
GWHAAZE00000009	CDS	66432105	66432335	+
GWHAAZE00000009	CDS	66433199	66433405	+
GWHAAZE00000009	CDS	66434113	66434419	+
GWHAAZE00000009	CDS	66440956	66441115	+
GWHAAZE00000009	CDS	66441226	66441334	+
GWHAAZE00000009	CDS	66441923	66442058	+
GWHAAZE00000009	CDS	66442346	66442401	+
GWHAAZE00000009	CDS	66444067	66444189	+
GWHAAZE00000009	CDS	66444866	66445534	+
GWHAAZE00000009	CDS	66447474	66447647	+

Transcript Sequence
>GWHTAAZE031918 ATGGCTTCTGTGGTTGGCCAACTCATTTTCCCTTCGAGTAATGGTTATAAAGTGTGGCAAGATCCATCAATCATAAAGTGGAGGAAGCGAGATGCTCATGTTACACTGCATTGCCATGATTCAGTTGAAGGATCTCTTAAATACTGGTATGAACGCAATAAAGTGGATCTTCAGATATCCATATCAGCACCGTGGGATAATGACGCCGTTTCTAGTGCTCTTGATTCTGCTGCTTTGTGGGTCAAGGACTTGCCGTTTGTTATGTCTTTGTCTGGCTACTGGAAATTTTGTCTCGCTCCTAGTCCAAATAAAGTCCCTTTGAATTTTCACGATGGTTCGTTTGAAGATTCTACATGGGAAACTATACCAGTACCTTCGAACTGGCAGATGCATGGATTTGACCGGCCTATATATACAAATGTTATATATCCATTTCCACTTGATCCACCAAATGTTCCTGAGGAAGATAATCCTACTGGCTGCTACAGAACATCCTTCCGCCTTTCTAAAGATTGGGAAGGTCGGAGGATATTTTTACACTTTGAAGCTGTTGACTCCGCATTCTATGCATGGATAAATGGGGTTCCTGTTGGATATAGTGGAAGTAGAGAGGAAGACAAGAAGATAATAGGGAGAGGAAGACTAGCAATTCCTCCCCCTGTCAAAATGGACAGTCAGGATAGTAGACTGCCTGCTGAGTTTGAAATCACGGATTTCTGTCACCCAATTGGATCTGAAAAGAAGAATGTTCTAGCTGTTCAAGTATTTAGATGGAGTGACGGTTCTTACCTTGAAGATCAAGATCATTGGTGGTTATCTGGCATTCATCGTGATGTGCTTCTTCTTTCGAAGCCAAAGGTATTCATTGCAGACTATTTCTTCGCATCAAACTTGGGGGAAAATTATTCCGATGCCGATATACAGTGGTTTATTTATGGTCAAAATGGATTTGATATGACCCAAGAGGCTGAGGGATATGTGGTTGAAGACCGCAGTGTTGAAGTGAAAATTGATAACTCAAGGGAAAAAACCAAGGATGATGTCCTCACAAACTACAATATTGAAGCTGCACTCTTTGACACTGGCGGTTTAGATGGCACTGATAGTATGATCTCAACTGATGTGGCTCATTTGGAACTCTTTAAGTACAGTGGTCCGGTTTTGGGGTTCCATGGGTATCTACTTGTGGGGAAACTTCAAATGCCTAAGCTTTGGTCAGCCGAGCAACCAAACCTGTACACTCTTGTTGTCACTCTCAAAGATGCATCGGGCCACGTAGTTGATTGCGAATCATGCCAAGTAGGGATACGGCAAATATCTAAAGCCCCAAAACAGTTGCTCGTAAATGGGCGTCCAGTTATAATAAGAGGGGTAAACAGGCATGAACACCATCCACGTGTTGGAAAGACAAATGTGGAAGCTTGCATGGTTAAGGATTTGGTTCTAATGAAGCAAAACAATGTTAATGCCGTTAGAAACAGCCATTATCCCCAACATCCGCGATGGTATGAGTTATGTGATTTGTTTGGAATGTACATGATTGATGAAGCAAATATTGAGACACATGGTTTTGATCTTCCGGGACATACAAAGAAGCATCCCACGAAGGAACCAAGTTGGGCTTTTTCTATGATGGATCGCGTTGTAGGGATGGTTGAGAGGGACAAAAATTACGCATGCATTATTTCTTGGTCCTTGGGCAATGAGGCAAGCTATGGACCTAATCATGCTGCTATGGCTGGGTGGATAAGAGGAAAGGATCCATCAAGGGTGGTACACTATGAAGGTGGCGGGTCCAGGACTGTGTCAACAGACATTGTATGTCCCATGTATATGCGTGTTTGGGACATAGTTAAGATAGCCAAAGATCCTGCTGAAACACGCCCTTTAATACTCTGCGAGTACTCGCACGCGATGGGAAACAGCAACGGGAATCTTCATGAATACTGGGAAGCAATTGATAGCACATTTGGTCTCCAAGGAGGCTTTATTTGGGACTGGGTCGATCAGGGAATACTGAAGGATGGTGCCAATGGTAACAAGTATTGGGCATATGGAGGCGATTTCGGGGATACACCTAATGACTTGAACTTCTGTGCGAATGGTCTTGTATGGCCAGATCGGACGCCTCATCCTGCTATACATGAGGTTAAGTATGTCCACCAACCAATCAAGGTTTCATTCAGCGAAGGTGTAATTAAGGTCATCAACACTAAGGATGCCATTATCGGTAGTGAAATTCACGAGGATATGATAAGAGTTAGCCACCAGAAGTTTTGGGAGATAAACTTCAACAGCCAAACAGGTGTCATTGAGAGCTGGAAGGTTGAAGGAGTTCAAGTTATGCATAAAGGCATACTCCCATGCTTTTGGCGAGCACCAACCGATAACGACAAAGGCGGCGAACAAAATAGCTACTTCGCCAAGTGGAAAGCCGCTAATCTCGATAATCTAATTATCCTCAAAGAAAGCTGTAAAATTCAGAATGTGACCGATCATCTTGTTAAAGTAACAGTTGTCTACGTTGTTGGGATAAAGGGCGAAGATAACTTGGACGAATATTTCAATGTTGATCTAACTTACTCAATCCACGGCTCTGGAGATGTTATTATGCAATGCAATGTAAAGCCTTGTGATGGTCTTCCACCTTTGCCCCGCGTTGGAGTTGAGTTCCTTTTGGACAAATCGATGGACCAGATTAAATGGTATGGGAGAGGGCCGTTTGAATGTTATCCAGATCGAAAAGCGGGGGCCCATTTGGGAATATATGAGAATAACGTTGGTGAGATGCATGTTCCTTATATTGTTCCGGGGGAATGTTCTGGTAGGACTGATGTTAGGTGGGTCTCATTTCAAAATAAGGATGGGGTTGGAATTTTTGCTTCTATGTATGGTGACTCTCCGCCTATGCAAATGAATGCAAGTTATTATAGCACTGAGGAGTTACATCGGGCAACTCATGATTATGAGCTTATCAAAAGAGATGTTATTGAGGTGCATCTTGACCACAAACATATGGGTGTGGGTGGCGACGATAGCTGGTCGCCATGCGTGCACCACCAATATATGGTTCCTCCTCTGCCCTACTCCTTCTCTATCAGGTTCTCTCCTATCACTCCATCCATCTCTTCTCACCATATCTATAAAGCTCAGCTCTCAAACAATTGA

Network for GWHGAAZE031880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02837.19	Glyco_hydro_2_N	88	200	5.20E-22
PF02837.19	Glyco_hydro_2_N	223	285	4.60E-14
PF00703.22	Glyco_hydro_2	331	437	2.60E-11
PF02836.18	Glyco_hydro_2_C	444	725	2.60E-97
PF02929.18	Bgal_small_N	759	1034	6.50E-78

Protein Sequence

>GWHPAAZE031900
MASVVGQLIFPSSNGYKVWQDPSIIKWRKRDAHVTLHCHDSVEGSLKYWYERNKVDLQISISAPWDNDAVSSALDSAALWVKDLPFVMSLSGYWKFCLAPSPNKVPLNFHDGSFEDSTWETIPVPSNWQMHGFDRPIYTNVIYPFPLDPPNVPEEDNPTGCYRTSFRLSKDWEGRRIFLHFEAVDSAFYAWINGVPVGYSGSREEDKKIIGRGRLAIPPPVKMDSQDSRLPAEFEITDFCHPIGSEKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLSKPKVFIADYFFASNLGENYSDADIQWFIYGQNGFDMTQEAEGYVVEDRSVEVKIDNSREKTKDDVLTNYNIEAALFDTGGLDGTDSMISTDVAHLELFKYSGPVLGFHGYLLVGKLQMPKLWSAEQPNLYTLVVTLKDASGHVVDCESCQVGIRQISKAPKQLLVNGRPVIIRGVNRHEHHPRVGKTNVEACMVKDLVLMKQNNVNAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDLPGHTKKHPTKEPSWAFSMMDRVVGMVERDKNYACIISWSLGNEASYGPNHAAMAGWIRGKDPSRVVHYEGGGSRTVSTDIVCPMYMRVWDIVKIAKDPAETRPLILCEYSHAMGNSNGNLHEYWEAIDSTFGLQGGFIWDWVDQGILKDGANGNKYWAYGGDFGDTPNDLNFCANGLVWPDRTPHPAIHEVKYVHQPIKVSFSEGVIKVINTKDAIIGSEIHEDMIRVSHQKFWEINFNSQTGVIESWKVEGVQVMHKGILPCFWRAPTDNDKGGEQNSYFAKWKAANLDNLIILKESCKIQNVTDHLVKVTVVYVVGIKGEDNLDEYFNVDLTYSIHGSGDVIMQCNVKPCDGLPPLPRVGVEFLLDKSMDQIKWYGRGPFECYPDRKAGAHLGIYENNVGEMHVPYIVPGECSGRTDVRWVSFQNKDGVGIFASMYGDSPPMQMNASYYSTEELHRATHDYELIKRDVIEVHLDHKHMGVGGDDSWSPCVHHQYMVPPLPYSFSIRFSPITPSISSHHIYKAQLSNN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01190	lacZ	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Sphingolipid metabolism	map00600
		Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0009341	cellular_component	beta-galactosidase complex
GO:0004565	molecular_function	beta-galactosidase activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.144
	SRR3591706	second leaf	13.725
	SRR3591707	mature leaf	11.066
	SRR3591708	Shoot apex	19.380
	SRR3591709	Stem	30.554
	SRR3591710	White floral bud	27.700
	SRR3591711	White flower	27.980
	SRR3591712	Green floral bud	18.568
	SRR3591713	Yellow flower	53.399
SRP173429	SRR8316895	Juvenile bud stage	15.610
	SRR8316896	Juvenile bud stage	25.632
	SRR8316897	Juvenile bud stage	9.418
	SRR8316894	Third green stage	10.198
	SRR8316900	Third green stage	26.254
	SRR8316901	Third green stage	26.574
	SRR8316898	Complete white stage	11.833
	SRR8316899	Complete white stage	37.472
	SRR8316903	Complete white stage	18.577
	SRR8316902	Silver flowering stage	9.962
	SRR8316904	Silver flowering stage	14.998
	SRR8316905	Silver flowering stage	6.330
	SRR8316906	Gold flowering stage	20.693
	SRR8316907	Gold flowering stage	19.827
	SRR8316908	Gold flowering stage	19.185
SRP132670	SRR6706286	Control	26.747
	SRR6706287	Light intensity 50%	27.778
	SRR6706288	Light intensity 20%	30.652
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.180
	CNS0095593	Slightly white alabastrum(diploid) 2	18.685
	CNS0095594	Slightly white alabastrum(diploid) 3	18.876
	CNS0095595	Whole white alabastrum(diploid) 2	19.345
	CNS0095596	Whole white alabastrum(diploid) 3	21.819
	CNS0095597	Whole white alabastrum(diploid) 4	19.027
	CNS0095598	Silvery flower (diploied) 1	20.910
	CNS0095599	Silvery flower (diploied) 2	22.968
	CNS0095600	Silvery flower (diploied) 3	34.891
	CNS0095601	Golden flower (diploid) 1	19.784
	CNS0095602	Golden flower (diploid) 2	35.157
	CNS0095603	Golden flower (diploid) 3	33.996
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.366
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.898
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.401
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.475
	CNS0095610	Silvery flower (tetraploid) 1	43.369
	CNS0095611	Silvery flower (tetraploid) 2	50.174
	CNS0095612	Silvery flower (tetraploid) 3	32.373
	CNS0095613	Golden flower (tetraploid) 1	27.526
	CNS0095614	Golden flower (tetraploid) 2	43.049
	CNS0095615	Golden flower (tetraploid) 3	46.138
CRA001975	CRR073297	Stem 1	25.962
	CRR073298	Stem 2	23.577
	CRR073299	Stem 3	15.597
	CRR073300	Leaf 1	35.599
	CRR073301	Leaf 2	27.650
	CRR073302	Leaf 3	22.150
	CRR073303	Juvenile bud 1	26.989
	CRR073304	Juvenile bud 2	23.026
	CRR073305	Juvenile bud 3	27.876
	CRR073306	Third green 1	12.242
	CRR073307	Third green 2	10.336
	CRR073308	Third green 3	11.645
	CRR073309	Second white 1	12.643
	CRR073310	Second white 2	14.281
	CRR073311	Second white 3	11.577
	CRR073312	Silver flowering 1	9.797
	CRR073313	Silver flowering 2	10.537
	CRR073314	Silver flowering 3	9.451
	CRR073315	Gold flowering 1	11.862
	CRR073316	Gold flowering 2	18.552
	CRR073317	Gold flowering 3	12.176
	CRR073318	Tawny withering 1	20.779
	CRR073319	Tawny withering 2	20.146
	CRR073320	Tawny withering 3	17.057