Gene detail

Detail information of GWHGAAZE031886

Functional Annotation

Database	Orthologs	Annotation
Nr	AJB84621.1	zeta-carotene desaturase [Camellia sinensis]
COG	YP_007109803.1	zeta-carotene desaturase
Swissprot	tr\|Q9FV46\|ZDS_TARER	Zeta-carotene desaturase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|Q8H0Q6\|Q8H0Q6_HELAN	Zeta-carotene desaturase {ECO:0000313\|EMBL:AEI70832.1}
TAIR10	AT3G04870.2	zeta-carotene desaturase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66615469	66624762	+
GWHAAZE00000009	mRNA	66615469	66624762	+
GWHAAZE00000009	exon	66615469	66615969	+
GWHAAZE00000009	exon	66617532	66617656	+
GWHAAZE00000009	exon	66617952	66618086	+
GWHAAZE00000009	exon	66619149	66619221	+
GWHAAZE00000009	exon	66619388	66619461	+
GWHAAZE00000009	exon	66620157	66620261	+
GWHAAZE00000009	exon	66620405	66620649	+
GWHAAZE00000009	exon	66620766	66620853	+
GWHAAZE00000009	exon	66622253	66622295	+
GWHAAZE00000009	exon	66622388	66622544	+
GWHAAZE00000009	exon	66623119	66623247	+
GWHAAZE00000009	exon	66623387	66623459	+
GWHAAZE00000009	exon	66623793	66623957	+
GWHAAZE00000009	exon	66624604	66624762	+
GWHAAZE00000009	five_prime_UTR	66615469	66615785	+
GWHAAZE00000009	CDS	66615786	66615969	+
GWHAAZE00000009	CDS	66617532	66617656	+
GWHAAZE00000009	CDS	66617952	66618086	+
GWHAAZE00000009	CDS	66619149	66619221	+
GWHAAZE00000009	CDS	66619388	66619461	+
GWHAAZE00000009	CDS	66620157	66620261	+
GWHAAZE00000009	CDS	66620405	66620649	+
GWHAAZE00000009	CDS	66620766	66620853	+
GWHAAZE00000009	CDS	66622253	66622295	+
GWHAAZE00000009	CDS	66622388	66622544	+
GWHAAZE00000009	CDS	66623119	66623247	+
GWHAAZE00000009	CDS	66623387	66623459	+
GWHAAZE00000009	CDS	66623793	66623957	+
GWHAAZE00000009	CDS	66624604	66624762	+

Transcript Sequence
>GWHTAAZE031924 ACTCATATACTCCAACCACATTTATATTAGTAAGTTAAACAATCGAATACGCAAAAGATGCATTTATTTAAAACCAAAAACAAACCAACACAAATATGCCTAACAATTTTTTAACTCTAGAGAGAAAATCTCTGCCCCCCTCTCTCTCTTATGCTAACCAGACAAATCTCTCACTCCCAGCATCTCCTCTTCTTCAGATACTCTTATTCTTCTCACCTCAAAAAAAAAACACCTTTCGACTTCATTTCTCACCAAGCCAACACACATTCTATTCATTTTCACTCAAATTGTGTTTACTTGCATAGTTAGTTAAATTCATGGCTACTTCTTCTTCTCCTCCTCCCATCTGTTTTCCGGCCACCGGAAAATTGTCCACCGGTTTACGAAATCATTCTGCCGGATTAAGAATTTATGGTAGTCGCCGTCGGTTAGCCAGAACACGGAGATCGTTTGTTGTTCGGTCTGATTTGGACAGTAATGTTTCGGATATGAGTGTTAATGCTCCAAAAGGGTTATTTCCACCAGAACCTCAACACTATCGGGGACCCAAGCTGAAAGTGGCTATTATAGGAGCTGGGCTTGCAGGCATGTCAACTGCTGTGGAGCTTTTAGATCAAGGCCATGAGGTGGATATATATGATCAAAGATCTTTCATTGGTGGAAAAGTTGGTTCGTTTGTTGATAAACGTGGAAACCACATTGAAATGGGACTTCATGTTTTCTTTGGTTGCTACAATAATCTTTTCCGTCTTATGAAAAAGGTTGGCGCTGAAAAAAATCTGCTTGTGAAGGATCATACTCACACATTTGTAAACAAAGGGGGTGAAATTGGCGACCTTGATTTTCGTTTTCCAGTAGGAGCACCATTACATGGAATTAGTGCTTTCCTGTCTACAAATCAGCTTAAGGTTTATGATAAAGCAAGAAATGCTTTGGCTCTGGCCCTCAGTCCAGTTGTACGCGCCCTTGTTGACCCAGATGGAGCAATGAAGGACATACGGAATTTGGATAGTATAAGTTTCTCTGACTGGTTCATGTCCAAAGGGGGCACACGCACAAGTATCCAGAGGATGTGGGACCCTGTTGCTTATGCTCTGGGGTTTATTGACTGTGATAATATCAGTGCCCGTTGTATGCTCACTATTTTCTCATTGTTTGCGACTAAGACAGAGGCTTCCCTTTTGAGAATGCTTAAAGGTTCTCCTGATGTTTATTTGAGCGGTCCCATTAGAAATTACATCACAGAAAAAGGAGGAAGGTTCCACCTCAGGTGGGGATGCCGAGAAGTACTTTATGATAAAACTGCAGATGGAGAGACATATGTCTCTGGGATTGCCATGTCAAAGGCTACTCAAAAGAAAATTGTGAAAGCAGATGCTTATGTGGCTGCATGTGATGTCCCTGGAATTAAAAGATTAGTACCACCGGAGTGGAGGCAGTGGGAGTTGTTTGAAAATATCTACAAACTAGATGGAGTCCCCGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTGCAGGATTTAGAGCGATCAAGGCAATTGCGGCAAGCTGCGGGGTTGGATAATCTCCTCTATACCCCGGATGCAGATTTCTCTTGCTTTGCTGATCTGGCACTGACGTCTCCTGAAGATTACTATCGGGAGGGAGAAGGCTCATTGCTCCAATGTGTGCTTACTCCCGGTGATCCGTACATGCCTTTACCAAATGAGGAAATCATCAGAAGAGTAACTGATCAGGTTCTGTCATTATTCCCATCTTCCCAAGGATTGGAAGTTACATGGTCATCTGTGGTCAAAATTGGGCAATCTTTGTACCGTGAGGGACCTGGTAAAGATCCATTTAGACCTAATCAGAAGACACCTGTAAAGAACTTCTTCCTTGCTGGCTCCTATACGAAACAGGATTATATAGACTCCATGGAAGGAGCAACTCTTTCAGGAAGGCAAGCTTCTGCATACATATGTGATGCGGGTGAAGAATTGATGGCTTTACAAAAAGAATTAGCTGCAATTTTATCCCAAGATCTTATTTATAACACAGACGAGTTGACCCTTGTCTGA

Network for GWHGAAZE031886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	88	552	1.30E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00514	ZDS, crtQ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016117	biological_process	carotenoid biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016719	molecular_function	carotene 7,8-desaturase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.828
	SRR3591706	second leaf	16.284
	SRR3591707	mature leaf	14.402
	SRR3591708	Shoot apex	7.035
	SRR3591709	Stem	7.653
	SRR3591710	White floral bud	79.017
	SRR3591711	White flower	109.457
	SRR3591712	Green floral bud	46.767
	SRR3591713	Yellow flower	227.305
SRP173429	SRR8316895	Juvenile bud stage	19.967
	SRR8316896	Juvenile bud stage	30.391
	SRR8316897	Juvenile bud stage	16.152
	SRR8316894	Third green stage	16.685
	SRR8316900	Third green stage	73.972
	SRR8316901	Third green stage	70.420
	SRR8316898	Complete white stage	52.660
	SRR8316899	Complete white stage	107.240
	SRR8316903	Complete white stage	80.711
	SRR8316902	Silver flowering stage	51.003
	SRR8316904	Silver flowering stage	65.613
	SRR8316905	Silver flowering stage	34.631
	SRR8316906	Gold flowering stage	158.725
	SRR8316907	Gold flowering stage	121.237
	SRR8316908	Gold flowering stage	153.343
SRP132670	SRR6706286	Control	75.386
	SRR6706287	Light intensity 50%	75.696
	SRR6706288	Light intensity 20%	85.378
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.685
	CNS0095593	Slightly white alabastrum(diploid) 2	15.387
	CNS0095594	Slightly white alabastrum(diploid) 3	15.348
	CNS0095595	Whole white alabastrum(diploid) 2	19.585
	CNS0095596	Whole white alabastrum(diploid) 3	22.645
	CNS0095597	Whole white alabastrum(diploid) 4	24.214
	CNS0095598	Silvery flower (diploied) 1	40.860
	CNS0095599	Silvery flower (diploied) 2	49.954
	CNS0095600	Silvery flower (diploied) 3	185.141
	CNS0095601	Golden flower (diploid) 1	80.040
	CNS0095602	Golden flower (diploid) 2	189.159
	CNS0095603	Golden flower (diploid) 3	183.296
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.010
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.986
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.538
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.812
	CNS0095610	Silvery flower (tetraploid) 1	113.802
	CNS0095611	Silvery flower (tetraploid) 2	137.575
	CNS0095612	Silvery flower (tetraploid) 3	152.828
	CNS0095613	Golden flower (tetraploid) 1	166.988
	CNS0095614	Golden flower (tetraploid) 2	176.419
	CNS0095615	Golden flower (tetraploid) 3	242.929
CRA001975	CRR073297	Stem 1	26.855
	CRR073298	Stem 2	24.478
	CRR073299	Stem 3	25.692
	CRR073300	Leaf 1	54.142
	CRR073301	Leaf 2	43.557
	CRR073302	Leaf 3	48.862
	CRR073303	Juvenile bud 1	65.406
	CRR073304	Juvenile bud 2	91.788
	CRR073305	Juvenile bud 3	57.948
	CRR073306	Third green 1	71.151
	CRR073307	Third green 2	27.249
	CRR073308	Third green 3	41.606
	CRR073309	Second white 1	127.460
	CRR073310	Second white 2	108.371
	CRR073311	Second white 3	139.873
	CRR073312	Silver flowering 1	137.733
	CRR073313	Silver flowering 2	144.041
	CRR073314	Silver flowering 3	116.162
	CRR073315	Gold flowering 1	30.550
	CRR073316	Gold flowering 2	47.788
	CRR073317	Gold flowering 3	28.082
	CRR073318	Tawny withering 1	7.571
	CRR073319	Tawny withering 2	5.392
	CRR073320	Tawny withering 3	7.662