Gene detail

Detail information of GWHGAAZE031897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275778.1	1.2552E-124	PREDICTED: cysteine synthase [Vitis vinifera]
COG	YP_591171.1	1E-88	cysteine synthase
Swissprot	tr\|Q43317\|CYSK_CITLA	6E-121	Cysteine synthase
trEMBL	tr\|F6HTU9\|F6HTU9_VITVI	1E-124	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT2G43750.2	8E-96	O-acetylserine (thiol) lyase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66815983	66837094	+
GWHAAZE00000009	mRNA	66815983	66837094	+
GWHAAZE00000009	exon	66815983	66816021	+
GWHAAZE00000009	exon	66816111	66816220	+
GWHAAZE00000009	exon	66816362	66816419	+
GWHAAZE00000009	exon	66816840	66817103	+
GWHAAZE00000009	exon	66817928	66817979	+
GWHAAZE00000009	exon	66819480	66819559	+
GWHAAZE00000009	exon	66820572	66820631	+
GWHAAZE00000009	exon	66820748	66820825	+
GWHAAZE00000009	exon	66821541	66821591	+
GWHAAZE00000009	exon	66830260	66830369	+
GWHAAZE00000009	exon	66830510	66830567	+
GWHAAZE00000009	exon	66832006	66832089	+
GWHAAZE00000009	exon	66832481	66832532	+
GWHAAZE00000009	exon	66834990	66835069	+
GWHAAZE00000009	exon	66836583	66836642	+
GWHAAZE00000009	exon	66836743	66836823	+
GWHAAZE00000009	exon	66837005	66837094	+
GWHAAZE00000009	CDS	66815983	66816021	+
GWHAAZE00000009	CDS	66816111	66816220	+
GWHAAZE00000009	CDS	66816362	66816419	+
GWHAAZE00000009	CDS	66816840	66817103	+
GWHAAZE00000009	CDS	66817928	66817979	+
GWHAAZE00000009	CDS	66819480	66819559	+
GWHAAZE00000009	CDS	66820572	66820631	+
GWHAAZE00000009	CDS	66820748	66820825	+
GWHAAZE00000009	CDS	66821541	66821591	+
GWHAAZE00000009	CDS	66830260	66830369	+
GWHAAZE00000009	CDS	66830510	66830567	+
GWHAAZE00000009	CDS	66832006	66832089	+
GWHAAZE00000009	CDS	66832481	66832532	+
GWHAAZE00000009	CDS	66834990	66835069	+
GWHAAZE00000009	CDS	66836583	66836642	+
GWHAAZE00000009	CDS	66836743	66836823	+
GWHAAZE00000009	CDS	66837005	66837094	+

Transcript Sequence
>GWHTAAZE031935 ATGGAAGCTAAGTGCGAAATTGCAAACGATGTTACTGAACTAATTGGCAACACGCCAATGGTATATATCAATAAAATTGTGGATGGTTGTGTAGCTCGTATTGCTGCAAAGTTAGAGACAATGGAGCCCTGTTCTAGTGTGAAAGACAGGATTGGGTATAGTATGATTAAAGATGCAGAAGAGAAGGGCCTGATTACCCCTGGAAAGACGGTACTCATTGAGGCCACCAGTGGTAATACCGGCATAGGTTTGGCATTTATTGCAGCAGCTAAGGGTTACAAACTTATTGTAGTTATGCCGGCTTCATATAGCCTTGAAAGAAAGATTGTTCTGAGAGCTTTTGGAGCAGAAGTGTACCTCACTGATCCAGCCAAGGGAATTGATGGAATTCTTCAAAAGGTAGATGAGTTACTGGAAAAGACACCAAATGGCCATTTTCTTCGGCAATTCGACAATCCTGCCAACCCAAAGGTATATGGTGTAGAACCAACAGAAAGTGCCATTCTGAATGGGGGAAGCCCTGGCCCACACAAGATCCAAGGAATTGGTGCCGGTTTCATCCCTGGTACCTTGGACATCAGTCTGCTTGACGAAGTTGTTCCAATATCTAGTGAAGAAGCTATTGAAACTGCAAAACTTCTTGCATTGAAGGAAGGTTTGCTGGTAGGCCCTTCATCTGGCTGCAGCGCTGCTGCGATAAAGATAGCAAAGAGGCCAGAAAATGCTGGGAAACTCATTGTTGTGAATAGGGTAAACTTATCTTGTCCTGCATTTGGTGCTAGGGCAGATAGGCTAATTGGAAACACGCCAATGGTATATATCAATAAAATTGTGGATGGCTGTGTAGCTCGTATTGCTGCAAAGTTAGAGACAATGGAGCCCTGTTCTAGTGTGAAAGACAGGATTGGGTATAGTATGATTAAAGATGCAGAAGAGAAGGGATTGATTACCCCTGGAAAGATTCACTATGAAACTACTGGACCAGAGATCTGGAAGGGCTCTGATGGGAAAGTTGATGCCTTGGTTTGCGGGATAGGGACCGGGGTATATGGTGTAGAACCAGCTGAAAGTGCCATTCTGAATGGGGGAAGCCCTGGCCCACATAAGATCCAAGGACTTGGTGCTGGTTTCATCCCTAGTATCTTGGACGTCAGTCTTCTTGACGAAGTTGTTCCAATATCCAGTGAAGAAGCTATTGAAACTGCAAAACTTCTTGCATTGAAAGAAGGTTTGCTGGTAGGCCCTTCATCTGGGGCTGCGGCGGCTGCTGCAATACAGATAGCAAAGAGGCCAGAAAACGCTGGAAAACTCATTGTTTCGGTTTTCCCAAGCTTTGGAGAGCGGTACCTGTCAACTGTGATGTTTGATTCCTTACGGCAAGAAGCAGAAAGCATGACTTTCGAGTGA

Network for GWHGAAZE031897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	12	159	1.10E-30
PF00291.26	PALP	323	442	3.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.121
	SRR3591706	second leaf	6.008
	SRR3591707	mature leaf	12.289
	SRR3591708	Shoot apex	5.395
	SRR3591709	Stem	7.544
	SRR3591710	White floral bud	8.508
	SRR3591711	White flower	8.082
	SRR3591712	Green floral bud	5.376
	SRR3591713	Yellow flower	8.598
SRP173429	SRR8316895	Juvenile bud stage	3.537
	SRR8316896	Juvenile bud stage	3.624
	SRR8316897	Juvenile bud stage	2.342
	SRR8316894	Third green stage	1.819
	SRR8316900	Third green stage	5.864
	SRR8316901	Third green stage	5.170
	SRR8316898	Complete white stage	4.435
	SRR8316899	Complete white stage	11.432
	SRR8316903	Complete white stage	7.361
	SRR8316902	Silver flowering stage	4.417
	SRR8316904	Silver flowering stage	5.227
	SRR8316905	Silver flowering stage	3.458
	SRR8316906	Gold flowering stage	6.714
	SRR8316907	Gold flowering stage	8.449
	SRR8316908	Gold flowering stage	5.891
SRP132670	SRR6706286	Control	5.109
	SRR6706287	Light intensity 50%	5.329
	SRR6706288	Light intensity 20%	6.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.140
	CNS0095593	Slightly white alabastrum(diploid) 2	3.801
	CNS0095594	Slightly white alabastrum(diploid) 3	3.643
	CNS0095595	Whole white alabastrum(diploid) 2	4.110
	CNS0095596	Whole white alabastrum(diploid) 3	3.311
	CNS0095597	Whole white alabastrum(diploid) 4	3.544
	CNS0095598	Silvery flower (diploied) 1	7.628
	CNS0095599	Silvery flower (diploied) 2	7.963
	CNS0095600	Silvery flower (diploied) 3	11.238
	CNS0095601	Golden flower (diploid) 1	6.363
	CNS0095602	Golden flower (diploid) 2	6.778
	CNS0095603	Golden flower (diploid) 3	7.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.056
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.837
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.608
	CNS0095610	Silvery flower (tetraploid) 1	7.030
	CNS0095611	Silvery flower (tetraploid) 2	7.962
	CNS0095612	Silvery flower (tetraploid) 3	7.126
	CNS0095613	Golden flower (tetraploid) 1	3.169
	CNS0095614	Golden flower (tetraploid) 2	4.899
	CNS0095615	Golden flower (tetraploid) 3	4.492
CRA001975	CRR073297	Stem 1	6.744
	CRR073298	Stem 2	6.045
	CRR073299	Stem 3	5.377
	CRR073300	Leaf 1	5.988
	CRR073301	Leaf 2	6.794
	CRR073302	Leaf 3	6.101
	CRR073303	Juvenile bud 1	5.185
	CRR073304	Juvenile bud 2	4.713
	CRR073305	Juvenile bud 3	5.978
	CRR073306	Third green 1	6.274
	CRR073307	Third green 2	6.192
	CRR073308	Third green 3	3.770
	CRR073309	Second white 1	7.136
	CRR073310	Second white 2	10.417
	CRR073311	Second white 3	3.664
	CRR073312	Silver flowering 1	2.639
	CRR073313	Silver flowering 2	2.136
	CRR073314	Silver flowering 3	1.028
	CRR073315	Gold flowering 1	22.361
	CRR073316	Gold flowering 2	19.047
	CRR073317	Gold flowering 3	10.569
	CRR073318	Tawny withering 1	9.415
	CRR073319	Tawny withering 2	7.237
	CRR073320	Tawny withering 3	5.568