Gene detail

Detail information of GWHGAAZE031908

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006347753.1	9.4375E-137	PREDICTED: perakine reductase-like isoform X1 [Solanum tuberosum]
COG	YP_004641887.1	5E-81	auxin-induced protein PCNT115
Swissprot	tr\|Q3L181\|PERR_RAUSE	8E-130	Perakine reductase
trEMBL	tr\|K4B0C6\|K4B0C6_SOLLC	2E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g097390.2.1}
TAIR10	AT1G60690.1	5E-72	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67090581	67094403	+
GWHAAZE00000009	mRNA	67090581	67094403	+
GWHAAZE00000009	exon	67090581	67090687	+
GWHAAZE00000009	exon	67091291	67091461	+
GWHAAZE00000009	exon	67092252	67092455	+
GWHAAZE00000009	exon	67092744	67092916	+
GWHAAZE00000009	exon	67093614	67093954	+
GWHAAZE00000009	exon	67094195	67094403	+
GWHAAZE00000009	five_prime_UTR	67090581	67090627	+
GWHAAZE00000009	CDS	67090628	67090687	+
GWHAAZE00000009	CDS	67091291	67091461	+
GWHAAZE00000009	CDS	67092252	67092455	+
GWHAAZE00000009	CDS	67092744	67092916	+
GWHAAZE00000009	CDS	67093614	67093743	+
GWHAAZE00000009	three_prime_UTR	67093744	67093954	+
GWHAAZE00000009	three_prime_UTR	67094195	67094403	+

Transcript Sequence
>GWHTAAZE031946 ATAATAATATAATAAATTAAATCAACTACAATTTTTCAATACAACAAATGGCTCAAGTGCACGACATTCATAATCCCAGAGTTAAACTTGGAAACCAGGGACTTGAGGTCTCAAAATTGGGATTTGGATGTATGGGTCTTAGTGGACACTACAATTCTCCAGTGGCAGAGGAGGATGGGATTCAAATAATCAAAGAATGCTTCAACAGAGGAATCACATTCTTGGATACTTCTGATATTTATGGTCTCAACCACGCCAATGAGATATTGGTTGGCAAGGCGCTGAAACATTTGCCTCGAGAAAAGATTCAGCTGGCCACAAAATTTGGGATTGCCAAACTGGAACCAACTAAAATGACAATCAAGGGTACCCCCGAATATGTCCGCTCTTGCTGCGAGGGTAGCCTAAAGCGCCTTGATGTGCATTACATTGATCTCTTCTATGTACATAGAATTGACACAACTGTACCTATCGAGGACACTATGGGAGAGCTTAAGAAATTGGTGGAAGAGGGTAAAGTAAAGTACATCGGCCTATCCGAGGCAAGCCCCGACACCATAAGGAGGGCCCATGCAGTTCATCCTATCACTGCTTTACAAATGGAGTATTCCCTTTGGACCCGTGACATTGAGGAAGATATTATCCCCCTTTGCAGGGAGCTTGGAATTGGGATAGTTCCTTACAGTCCTATTGGTCGGGGATTTTTCGCAGGCAAAGCAGTTAAAGAAAGTTTGCCTGCAAATAGTGCGTTGGTACGGAACTGTATAAGTACTTTCATTGATTGAGCTTATAGCCTTATACCCAAATTAACTTCATCCTAATCGACCCTTGTTTTCCGTCAGGCATCGTTTCCTAGGTTTATGGGACAAAACTTCGAGAAAAACAAGGTGATGTTCAATCGAATAGAAGCATTGGCCGAGAAGCATGGATGTAGTACTGCTCAACTTGCTCTTGCTTGGGTTCTTCATCAAGGGGATGATGTTGTACCTATTCCTGGAACAACCAAGATTAAAAACCTCGATGAAAATTTTAGTGCATTGAGAGTCAAACTCGCCAAAGATGATATGAAAGAGATTTTAGATGCGGTTCCTATCAACGAGGTAGCAGGGACTAGAAATATTGAAGAATCTCTGCACGTATCTTGGAAGTTTGTGAATACGCCACTAAAACATGGCAAGTGATTTTCTTCACATAGAAACTGGAGA

Network for GWHGAAZE031908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0246

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	23	229	1.20E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.598
	SRR3591706	second leaf	0.127
	SRR3591707	mature leaf	0.056
	SRR3591708	Shoot apex	2.703
	SRR3591709	Stem	0.876
	SRR3591710	White floral bud	2.299
	SRR3591711	White flower	8.286
	SRR3591712	Green floral bud	2.386
	SRR3591713	Yellow flower	6.831
SRP173429	SRR8316895	Juvenile bud stage	1.400
	SRR8316896	Juvenile bud stage	1.783
	SRR8316897	Juvenile bud stage	0.172
	SRR8316894	Third green stage	0.327
	SRR8316900	Third green stage	2.353
	SRR8316901	Third green stage	1.254
	SRR8316898	Complete white stage	2.077
	SRR8316899	Complete white stage	2.192
	SRR8316903	Complete white stage	3.034
	SRR8316902	Silver flowering stage	2.844
	SRR8316904	Silver flowering stage	2.816
	SRR8316905	Silver flowering stage	1.079
	SRR8316906	Gold flowering stage	10.846
	SRR8316907	Gold flowering stage	9.573
	SRR8316908	Gold flowering stage	6.389
SRP132670	SRR6706286	Control	2.022
	SRR6706287	Light intensity 50%	2.074
	SRR6706288	Light intensity 20%	2.570
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.670
	CNS0095593	Slightly white alabastrum(diploid) 2	28.708
	CNS0095594	Slightly white alabastrum(diploid) 3	37.730
	CNS0095595	Whole white alabastrum(diploid) 2	78.920
	CNS0095596	Whole white alabastrum(diploid) 3	0.745
	CNS0095597	Whole white alabastrum(diploid) 4	54.362
	CNS0095598	Silvery flower (diploied) 1	2.481
	CNS0095599	Silvery flower (diploied) 2	4.713
	CNS0095600	Silvery flower (diploied) 3	3.103
	CNS0095601	Golden flower (diploid) 1	2.184
	CNS0095602	Golden flower (diploid) 2	3.379
	CNS0095603	Golden flower (diploid) 3	3.691
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.136
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.330
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.111
	CNS0095610	Silvery flower (tetraploid) 1	7.199
	CNS0095611	Silvery flower (tetraploid) 2	2.435
	CNS0095612	Silvery flower (tetraploid) 3	4.675
	CNS0095613	Golden flower (tetraploid) 1	3.165
	CNS0095614	Golden flower (tetraploid) 2	5.111
	CNS0095615	Golden flower (tetraploid) 3	0.732
CRA001975	CRR073297	Stem 1	2.957
	CRR073298	Stem 2	3.327
	CRR073299	Stem 3	3.547
	CRR073300	Leaf 1	2.722
	CRR073301	Leaf 2	2.411
	CRR073302	Leaf 3	2.363
	CRR073303	Juvenile bud 1	0.924
	CRR073304	Juvenile bud 2	1.933
	CRR073305	Juvenile bud 3	1.545
	CRR073306	Third green 1	0.579
	CRR073307	Third green 2	1.514
	CRR073308	Third green 3	1.345
	CRR073309	Second white 1	0.525
	CRR073310	Second white 2	0.786
	CRR073311	Second white 3	0.158
	CRR073312	Silver flowering 1	0.860
	CRR073313	Silver flowering 2	0.176
	CRR073314	Silver flowering 3	0.508
	CRR073315	Gold flowering 1	0.451
	CRR073316	Gold flowering 2	1.352
	CRR073317	Gold flowering 3	1.719
	CRR073318	Tawny withering 1	9.695
	CRR073319	Tawny withering 2	15.345
	CRR073320	Tawny withering 3	2.687