Gene detail

Detail information of GWHGAAZE031917

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271491.1	0	PREDICTED: WD repeat-containing protein 48 [Vitis vinifera]
COG	YP_007054747.1	1E-27	WD40 repeat-containing protein
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	3E-18	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A068UJ71\|A0A068UJ71_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_34 {ECO:0000313\|EMBL:CDP08595.1}
TAIR10	AT3G05090.2	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67263468	67284969	+
GWHAAZE00000009	mRNA	67263468	67284969	+
GWHAAZE00000009	exon	67263468	67263575	+
GWHAAZE00000009	exon	67264785	67264943	+
GWHAAZE00000009	exon	67265198	67265263	+
GWHAAZE00000009	exon	67265362	67265451	+
GWHAAZE00000009	exon	67266321	67266626	+
GWHAAZE00000009	exon	67267090	67267187	+
GWHAAZE00000009	exon	67271529	67271564	+
GWHAAZE00000009	exon	67273502	67273622	+
GWHAAZE00000009	exon	67274062	67274298	+
GWHAAZE00000009	exon	67276884	67276979	+
GWHAAZE00000009	exon	67277494	67277559	+
GWHAAZE00000009	exon	67278293	67278331	+
GWHAAZE00000009	exon	67278424	67278558	+
GWHAAZE00000009	exon	67282112	67282436	+
GWHAAZE00000009	exon	67283185	67283300	+
GWHAAZE00000009	exon	67283732	67283829	+
GWHAAZE00000009	exon	67284852	67284969	+
GWHAAZE00000009	CDS	67263468	67263575	+
GWHAAZE00000009	CDS	67264785	67264943	+
GWHAAZE00000009	CDS	67265198	67265263	+
GWHAAZE00000009	CDS	67265362	67265451	+
GWHAAZE00000009	CDS	67266321	67266626	+
GWHAAZE00000009	CDS	67267090	67267187	+
GWHAAZE00000009	CDS	67271529	67271564	+
GWHAAZE00000009	CDS	67273502	67273622	+
GWHAAZE00000009	CDS	67274062	67274298	+
GWHAAZE00000009	CDS	67276884	67276979	+
GWHAAZE00000009	CDS	67277494	67277559	+
GWHAAZE00000009	CDS	67278293	67278331	+
GWHAAZE00000009	CDS	67278424	67278558	+
GWHAAZE00000009	CDS	67282112	67282436	+
GWHAAZE00000009	CDS	67283185	67283300	+
GWHAAZE00000009	CDS	67283732	67283829	+
GWHAAZE00000009	CDS	67284852	67284969	+

Transcript Sequence
>GWHTAAZE031955 GTTTGTGCAATGCATCGCGTAGCAAGTGCAGGGAACACGGGCAATTCAGTTCGCCCCCGCAAGGAGAAGAGGTTGACTTATGTGTTGAATGATGCTTATGACACAAAGCATTGTGCAGGTATAAATTGTTTGGCTGTATTGAAGTCATCGGCACCAGATGGGCAAGATTTCCTCTTCACTGGAAGCCGTGATGGCAGGTTAAAGAGATGGGAATTGGCTGAAGATAGTGCAACCTGTTCTGCTACATTTGAATCACATGTTGATTGGGTCAATGATGCTGTCCTTGCAGGTGGTAATACCCTTGTTTCATGCTCATCAGACACTACAGTCAAGGCATGGAATTGCTTGTCTGATGGAACATGCGTCAGGACTCTCCGTCAACATTCAGATTATGTAACTTGTCTGGCTACCGCAGAAAAAAATAGCAATATCGTTGCATCTGGTGGCCTTGGTGGTGAGGTCTTCGTATGGGATCTTGAAGCTGCTCTTGCTCCACTCTCTAAGTCAGGTGATGCAATGGAAGATGATTGTTCAAATGGTACCATCGGTTCGGGGAATTCACTACCCATTACTAGTCTACGCACTATTGGCTCAAGCAACAACATTTCTTTACACACAACTCAGTCTCCAGGATATGTTCCTATTGCTGCTAAAGGCCATAAGGAGTCGGTTTATGCTTTGGCAATGAATGATAGTGGGACCCTTCTTGTTTCTGGCGGAACTGAGAAGGTTGTGCGTGTTTGGGACCCAAGAAGTGGTTCTAAGACCATGAAGCTTAGAGGCCATACTGATAATGTTAGGGCCTTGCTGCTGGATTCTACTGGGAGGTTCTGCTTATCAGGATCCTCCGATTCCATGATCAGACTCTGGGATCTTGGCCAGCAGCGGTGTGTACATTCTTATGCCGTTCATACAGATTCTGTGTGGGCACTTGCCAGTACCCCCACGTTTAGTCATGTTTATAGCGGTGGAAGAGACCTTTCTTTGTATTTGACAGACTTGGCAACAAGGGAGAGTATATTGCTTTGCACGAAGGAACATCCTATTCTGCAGTTGGCTTTGCATAATGATGGTATATGGGTTGCAACTACGGATTCTTCTGTACATAGATGGCCTGCTGAAGGCCGTAATCCTCAGAAGGTTTTCCAAAGAGGTGGTTCTTTCTTGGCTGGAAACTTGTCGTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCTACACCTGTTCCCGTTTATAGAGAACCATCGTTTAGCATCCCTGGAATTCCAGGAATTGTACAGCATGAAATTTTAAACAATAAGAGGCATGTTTTGACTAAGGATGCTGCCGAGTCCGTGAAGCTGTGGGAGATCACGAGGGGCATTGTGGTTGAGGACTATGGACAGGTGTCATTTGAGAAGAAGAAAGAAGAGCTGTTTGAGATGGTAAGCATTCCTTCGTGGTTCACTCTAGATTCGAGGCTTGGAAACTTGTCTGTACATTTGGATACCCCACAATGCTTTTCTGCTGAGATGTATTCTGCTGACCTTAACATCAATGGGAAACCCGAGGATGACAAGGTTAATTTGGCACGAGAAACGCTTAAAGGGTTATTGGCTCATTGGTTAACGAAGAGAAAACAGAGATTTGGGTCCCATGCTCCATCCAATGGGGACGTTTCTTCTGTGAAGGATATATCTGCTAGGAGCTTTATTACCCATTCAAGAGTTGAGGTAGATGGTAATGCTGAAAACGATTCTTTGGTATATCCTCCTTTTGAATTTTCATCAGATTCCCCTCCTTCGGTTATTACTGAGGGCTCTCAAAGTGGTCCGTGGAGAAAGAAAGTTACGGAGTTGGATGGAACCGAAGATGAGAAGGACTTTCCTTGGTGGGTTTTGGACTCTTTCTCAGTAATTTTGCACAGGTGCAGCTTTTATCTACAAGCATGTGAAGGCTCAGCTTTTCAAATCCTTACTCAAGGGAAACTGAGTGCGCCTCGTATATTGAGAATACATAAAGTTGTTAACTATGTTGTGGAAAAGATGGTACTTGACAAGCCATTGGATGGTATAAATTTGGATTCAGCTTTTGGTCCTGGAGGAGATGGTTCTTTCCGGGTCTGGTTTGTTTTCCAGATCTTATCCCCTGAGATGAGCTTAGCCACTGTACGGGCTTATATATGGAAGAAATCCGAAGACCTTGTCCTCAATTACCGAGTTTTACAGGGAAGATGA

Network for GWHGAAZE031917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	78	114	0.12
PF00400.33	WD40	119	158	0.00081
PF00400.33	WD40	218	249	0.00075
PF00400.33	WD40	255	291	0.00014
PF11816.9	DUF3337	619	732	9.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K15361	WDR48, UAF1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.100
	SRR3591706	second leaf	12.412
	SRR3591707	mature leaf	14.631
	SRR3591708	Shoot apex	14.763
	SRR3591709	Stem	20.450
	SRR3591710	White floral bud	20.967
	SRR3591711	White flower	24.409
	SRR3591712	Green floral bud	17.144
	SRR3591713	Yellow flower	21.467
SRP173429	SRR8316895	Juvenile bud stage	11.230
	SRR8316896	Juvenile bud stage	15.781
	SRR8316897	Juvenile bud stage	7.454
	SRR8316894	Third green stage	6.351
	SRR8316900	Third green stage	15.091
	SRR8316901	Third green stage	15.896
	SRR8316898	Complete white stage	9.032
	SRR8316899	Complete white stage	25.223
	SRR8316903	Complete white stage	18.497
	SRR8316902	Silver flowering stage	10.267
	SRR8316904	Silver flowering stage	16.280
	SRR8316905	Silver flowering stage	7.068
	SRR8316906	Gold flowering stage	25.071
	SRR8316907	Gold flowering stage	22.077
	SRR8316908	Gold flowering stage	20.909
SRP132670	SRR6706286	Control	13.480
	SRR6706287	Light intensity 50%	13.030
	SRR6706288	Light intensity 20%	14.143
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.322
	CNS0095593	Slightly white alabastrum(diploid) 2	8.515
	CNS0095594	Slightly white alabastrum(diploid) 3	6.495
	CNS0095595	Whole white alabastrum(diploid) 2	7.227
	CNS0095596	Whole white alabastrum(diploid) 3	7.137
	CNS0095597	Whole white alabastrum(diploid) 4	5.678
	CNS0095598	Silvery flower (diploied) 1	12.237
	CNS0095599	Silvery flower (diploied) 2	11.803
	CNS0095600	Silvery flower (diploied) 3	24.233
	CNS0095601	Golden flower (diploid) 1	10.551
	CNS0095602	Golden flower (diploid) 2	24.560
	CNS0095603	Golden flower (diploid) 3	22.522
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.683
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.701
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.253
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.742
	CNS0095610	Silvery flower (tetraploid) 1	26.366
	CNS0095611	Silvery flower (tetraploid) 2	22.888
	CNS0095612	Silvery flower (tetraploid) 3	24.473
	CNS0095613	Golden flower (tetraploid) 1	13.700
	CNS0095614	Golden flower (tetraploid) 2	22.059
	CNS0095615	Golden flower (tetraploid) 3	22.142
CRA001975	CRR073297	Stem 1	16.840
	CRR073298	Stem 2	15.841
	CRR073299	Stem 3	15.452
	CRR073300	Leaf 1	20.328
	CRR073301	Leaf 2	15.224
	CRR073302	Leaf 3	14.507
	CRR073303	Juvenile bud 1	15.664
	CRR073304	Juvenile bud 2	13.469
	CRR073305	Juvenile bud 3	20.534
	CRR073306	Third green 1	12.048
	CRR073307	Third green 2	9.610
	CRR073308	Third green 3	10.712
	CRR073309	Second white 1	14.572
	CRR073310	Second white 2	15.736
	CRR073311	Second white 3	15.768
	CRR073312	Silver flowering 1	13.631
	CRR073313	Silver flowering 2	13.454
	CRR073314	Silver flowering 3	9.660
	CRR073315	Gold flowering 1	10.128
	CRR073316	Gold flowering 2	16.556
	CRR073317	Gold flowering 3	10.964
	CRR073318	Tawny withering 1	11.237
	CRR073319	Tawny withering 2	11.086
	CRR073320	Tawny withering 3	11.742