Gene detail

Detail information of GWHGAAZE031972

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284899.1	1.3433E-108	PREDICTED: E3 ubiquitin-protein ligase ATL6 [Vitis vinifera]
Swissprot	tr\|Q8RXX9\|ATL6_ARATH	4E-80	E3 ubiquitin-protein ligase ATL6 (Precursor)
trEMBL	tr\|A5BY68\|A5BY68_VITVI	5E-109	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83712.1}
TAIR10	AT3G05200.1	1E-50	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68307120	68308133	+
GWHAAZE00000009	mRNA	68307120	68308133	+
GWHAAZE00000009	exon	68307120	68307619	+
GWHAAZE00000009	exon	68307671	68308133	+
GWHAAZE00000009	CDS	68307120	68307619	+
GWHAAZE00000009	CDS	68307671	68308133	+

Transcript Sequence
>GWHTAAZE032010 ATGGCGATAATCATCGTCGTCCTCGTTGCCGCCCTCTTTTTCATGGCTTTCTTCTCCATCTACATCCGCCGCTGCTCCAACGCCAACTCCGGCGGCAACGTCCGCCCCATCCTATCCATGCGCCGACGCGCGGCTGCGGCGCGTGGACTCGACGCGCAGGTGATTGAGACTTTCCCGACGTTCCCGTACTCGGAAGTGAAAGGGCTGCAGATCGGGAAAGGCGCGTTGGAGTGTGCCGTTTGTTTAAACGAGTTTGAAGATGAAGAAACGCTGCGTTTGATACCAAAGTGCGATCACGTGTTCCATCCCGACTGTATTGATGCTTGGCTCGAATCGCACGTGACCTGCCCCGTTTGCCGAGCCAATCTCGTCCCCGAAGACGGTGACGTTGCGGTCCAGGAAAATATTAATAACGGTGAACAACAGGAAAACGGTGACGTTTTGGTACCAATTAGTGATGATATTGAAACAAATAGGCCTAATAATAATAACAACACTAGGCAAAATCAAAACCGTCCACCTAGATCTAGATCTGTGCGACCAAGAATATTCGAGAGGTTTAGGTCGCACTCGACCGGTCACTCACTGGTTCAAGCTGGTGAGAATGTGGACCGGTTCACGCTAAGGCTACTTCCGGAGGTGAGGAAAGAGGTGATGAAACGGGCGTTGCTGAACCGGACCGCGAGTAGTGTTGTGGTTAGGGGTTATAGAGCCGGTGAAGGTAGTAGTAGAGGCAAATCGATCCGGAGGCTCGAGGGTTTGGATGAACAGGTTAAATCAGACCGGTGGGGGTTTTCTAGGGTTCCATCTTTTTTGTCGAGGGCTTTTTCGGTGAGGTCTCCCAAAGTTGCAGCAGCTGTGGCTAACGGAGAGGCATCGACGTCGTCAATGATTCCGGCCGGGCCGCTGAGAAGTGACGATCCCGGTCCGGTTCCAACCGAGTCGGTTCGGCCTCCGGTTTAA

Network for GWHGAAZE031972

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	77	120	2.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.519
	SRR3591706	second leaf	2.972
	SRR3591707	mature leaf	2.881
	SRR3591708	Shoot apex	6.109
	SRR3591709	Stem	24.254
	SRR3591710	White floral bud	24.740
	SRR3591711	White flower	89.765
	SRR3591712	Green floral bud	3.558
	SRR3591713	Yellow flower	74.087
SRP173429	SRR8316895	Juvenile bud stage	3.333
	SRR8316896	Juvenile bud stage	2.332
	SRR8316897	Juvenile bud stage	1.997
	SRR8316894	Third green stage	2.090
	SRR8316900	Third green stage	2.345
	SRR8316901	Third green stage	2.383
	SRR8316898	Complete white stage	13.791
	SRR8316899	Complete white stage	8.299
	SRR8316903	Complete white stage	16.586
	SRR8316902	Silver flowering stage	93.094
	SRR8316904	Silver flowering stage	105.118
	SRR8316905	Silver flowering stage	69.279
	SRR8316906	Gold flowering stage	257.747
	SRR8316907	Gold flowering stage	238.609
	SRR8316908	Gold flowering stage	178.857
SRP132670	SRR6706286	Control	4.299
	SRR6706287	Light intensity 50%	4.615
	SRR6706288	Light intensity 20%	3.206
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.883
	CNS0095593	Slightly white alabastrum(diploid) 2	6.820
	CNS0095594	Slightly white alabastrum(diploid) 3	7.433
	CNS0095595	Whole white alabastrum(diploid) 2	4.611
	CNS0095596	Whole white alabastrum(diploid) 3	0.623
	CNS0095597	Whole white alabastrum(diploid) 4	3.862
	CNS0095598	Silvery flower (diploied) 1	27.570
	CNS0095599	Silvery flower (diploied) 2	22.630
	CNS0095600	Silvery flower (diploied) 3	98.386
	CNS0095601	Golden flower (diploid) 1	38.830
	CNS0095602	Golden flower (diploid) 2	71.697
	CNS0095603	Golden flower (diploid) 3	65.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.888
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.511
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.291
	CNS0095610	Silvery flower (tetraploid) 1	15.552
	CNS0095611	Silvery flower (tetraploid) 2	24.309
	CNS0095612	Silvery flower (tetraploid) 3	237.003
	CNS0095613	Golden flower (tetraploid) 1	56.375
	CNS0095614	Golden flower (tetraploid) 2	25.765
	CNS0095615	Golden flower (tetraploid) 3	64.893
CRA001975	CRR073297	Stem 1	3.729
	CRR073298	Stem 2	3.238
	CRR073299	Stem 3	5.009
	CRR073300	Leaf 1	3.232
	CRR073301	Leaf 2	3.336
	CRR073302	Leaf 3	3.599
	CRR073303	Juvenile bud 1	3.898
	CRR073304	Juvenile bud 2	3.563
	CRR073305	Juvenile bud 3	3.929
	CRR073306	Third green 1	465.501
	CRR073307	Third green 2	335.962
	CRR073308	Third green 3	307.076
	CRR073309	Second white 1	761.422
	CRR073310	Second white 2	627.956
	CRR073311	Second white 3	573.042
	CRR073312	Silver flowering 1	626.255
	CRR073313	Silver flowering 2	751.658
	CRR073314	Silver flowering 3	559.167
	CRR073315	Gold flowering 1	6.801
	CRR073316	Gold flowering 2	6.597
	CRR073317	Gold flowering 3	13.726
	CRR073318	Tawny withering 1	28.613
	CRR073319	Tawny withering 2	44.596
	CRR073320	Tawny withering 3	19.912