Gene detail

Detail information of GWHGAAZE031973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009335627.1	0	PREDICTED: DNA excision repair protein ERCC-1 [Pyrus x bretschneideri]
Swissprot	tr\|Q9MA98\|ERCC1_ARATH	1E-161	DNA excision repair protein ERCC-1
trEMBL	tr\|M5VZH2\|M5VZH2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06496.1}
TAIR10	AT3G05210.1	7E-122	nucleotide repair protein, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68338171	68345377	+
GWHAAZE00000009	mRNA	68338171	68345377	+
GWHAAZE00000009	exon	68338171	68338470	+
GWHAAZE00000009	exon	68338739	68338844	+
GWHAAZE00000009	exon	68340319	68340422	+
GWHAAZE00000009	exon	68341310	68341409	+
GWHAAZE00000009	exon	68341812	68341888	+
GWHAAZE00000009	exon	68342164	68342263	+
GWHAAZE00000009	exon	68342645	68342716	+
GWHAAZE00000009	exon	68342803	68342871	+
GWHAAZE00000009	exon	68345060	68345377	+
GWHAAZE00000009	five_prime_UTR	68338171	68338204	+
GWHAAZE00000009	CDS	68338205	68338470	+
GWHAAZE00000009	CDS	68338739	68338844	+
GWHAAZE00000009	CDS	68340319	68340422	+
GWHAAZE00000009	CDS	68341310	68341409	+
GWHAAZE00000009	CDS	68341812	68341888	+
GWHAAZE00000009	CDS	68342164	68342263	+
GWHAAZE00000009	CDS	68342645	68342716	+
GWHAAZE00000009	CDS	68342803	68342871	+
GWHAAZE00000009	CDS	68345060	68345377	+

Transcript Sequence
>GWHTAAZE032011 TGAAGAAAACTGAAGAAGAGGTCTTCAAAAGAAAATGGGCAACAATGGCGATGGAGACCAACACAACATCAATAATAATAATCAAGAAAAGAGCTCATTCGTCATAAAAATCCCTTCCTTTCAAGAAGTTCTCGAATCTTCTTCTCAATCCAACAGGGCACCGTCCCTCTTCAATCCTTCCCAATCCTTCACTCAAGCCTTCAATTTCATCAAGAAGTCCGACTTCTACACGCCTCCGCCTCCTCCACCGCCAAAGGCGGAGGCCTCCTCTTCTTCGCAACCACAGAATGCTGATTCAAGGACTTCGGCGTTATCGTTCTCAGCTCCTGCTATTGCTTCTTCTTCCTCACCTTTTGTGGGGAAAAATGCCCCGAATCGCAATGCAATTCTTGTAAGCCATAGACAGAAGGGAAATCCTTTGCTAAAGCATATAAGGAATGTGAGATGGGATTTTGCAGATATTGTTTGTGACTACTTGTTGGGGCAGAATTCCTGTGCCCTTTATTTAAGTCTTAGGTATCATCTCCTTCATCCAGACTACCTATATTATCGAATAAGGGAGTTGCAGAAGAACTTCAAGCTTCGTGTTGTTTTGTGCCATGTCGATGTTGAAGATGTAGTTAAGCCTTTACTCGAAGTCACAAAAACATCTCTGCTTCATGACTGCACCCTTTTATGTGCTTGGAGCTTGGAAGAATGTGGTCGATATTTGGAGACAATAAAAGTTTATGAAAACAAGCCTGCTGATATTATTCAAGGGCAAATGGACACGGACTATTTATCACGGCTAACTCACGCACTCACAACAGTTCGACACCTCAACAAGACAGATGTGGTTACTCTTGGTTCTACTTTCGGGTCTCTTTCTCATATTATGGATGCATCCATGGAAGATCTAGCTCGTTGTCCTGGAATAGGAGAACGAAAGGTAAAACGTTTGTACGACACTTTTCATGAACCGTTCAAGCGTGTAGTTCCGACCCGAACTTCGGCACCAGAAATTCCTGCTGAGACTTCTGCGGTGAATGAACCAAAAGAAGATGAAGAAATGGAACTCGGCAGTGGTAACAAAAATACGGTGAAAGAACCCGAGTTAAACGTTAAATCAGCCCTATCGGCGGCTTTTGCTAAATACGCTGAGAAAGTTGGCGAAAAGAACAAGAAAACAAAACGACAGAAAAGCGATGATGTTGCTGAGGAAACAAAAGCCGGAAATAGGAATTCTAGTGAAGATGCCTCGAGTTAA

Network for GWHGAAZE031973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03834.15	Rad10	118	230	5.20E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10849	ERCC1	Nucleotide excision repair	map03420
K10849	ERCC1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0005634	cellular_component	nucleus
GO:0003684	molecular_function	damaged DNA binding
GO:0004519	molecular_function	endonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.118
	SRR3591706	second leaf	8.789
	SRR3591707	mature leaf	9.597
	SRR3591708	Shoot apex	13.030
	SRR3591709	Stem	11.419
	SRR3591710	White floral bud	60.748
	SRR3591711	White flower	67.963
	SRR3591712	Green floral bud	13.670
	SRR3591713	Yellow flower	68.016
SRP173429	SRR8316895	Juvenile bud stage	8.604
	SRR8316896	Juvenile bud stage	10.086
	SRR8316897	Juvenile bud stage	6.409
	SRR8316894	Third green stage	5.435
	SRR8316900	Third green stage	14.224
	SRR8316901	Third green stage	14.708
	SRR8316898	Complete white stage	21.482
	SRR8316899	Complete white stage	18.008
	SRR8316903	Complete white stage	40.477
	SRR8316902	Silver flowering stage	53.632
	SRR8316904	Silver flowering stage	90.090
	SRR8316905	Silver flowering stage	49.083
	SRR8316906	Gold flowering stage	140.576
	SRR8316907	Gold flowering stage	133.988
	SRR8316908	Gold flowering stage	111.543
SRP132670	SRR6706286	Control	9.470
	SRR6706287	Light intensity 50%	11.053
	SRR6706288	Light intensity 20%	10.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.642
	CNS0095593	Slightly white alabastrum(diploid) 2	8.952
	CNS0095594	Slightly white alabastrum(diploid) 3	8.083
	CNS0095595	Whole white alabastrum(diploid) 2	8.868
	CNS0095596	Whole white alabastrum(diploid) 3	6.735
	CNS0095597	Whole white alabastrum(diploid) 4	8.891
	CNS0095598	Silvery flower (diploied) 1	20.600
	CNS0095599	Silvery flower (diploied) 2	16.194
	CNS0095600	Silvery flower (diploied) 3	34.591
	CNS0095601	Golden flower (diploid) 1	18.909
	CNS0095602	Golden flower (diploid) 2	28.292
	CNS0095603	Golden flower (diploid) 3	28.503
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.824
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.761
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.405
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.897
	CNS0095610	Silvery flower (tetraploid) 1	29.659
	CNS0095611	Silvery flower (tetraploid) 2	42.748
	CNS0095612	Silvery flower (tetraploid) 3	266.501
	CNS0095613	Golden flower (tetraploid) 1	62.084
	CNS0095614	Golden flower (tetraploid) 2	27.863
	CNS0095615	Golden flower (tetraploid) 3	86.400
CRA001975	CRR073297	Stem 1	11.970
	CRR073298	Stem 2	9.348
	CRR073299	Stem 3	7.742
	CRR073300	Leaf 1	15.241
	CRR073301	Leaf 2	12.761
	CRR073302	Leaf 3	7.812
	CRR073303	Juvenile bud 1	9.137
	CRR073304	Juvenile bud 2	7.894
	CRR073305	Juvenile bud 3	8.897
	CRR073306	Third green 1	118.459
	CRR073307	Third green 2	95.037
	CRR073308	Third green 3	103.022
	CRR073309	Second white 1	159.539
	CRR073310	Second white 2	223.198
	CRR073311	Second white 3	219.115
	CRR073312	Silver flowering 1	180.471
	CRR073313	Silver flowering 2	160.669
	CRR073314	Silver flowering 3	166.254
	CRR073315	Gold flowering 1	5.141
	CRR073316	Gold flowering 2	9.075
	CRR073317	Gold flowering 3	2.934
	CRR073318	Tawny withering 1	5.424
	CRR073319	Tawny withering 2	6.505
	CRR073320	Tawny withering 3	4.598