Gene detail

Detail information of GWHGAAZE031979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002512354.1	1.6834E-179	cation:cation antiporter, putative [Ricinus communis]
COG	YP_003061204.1	0.000007	CaCA family Na+/Ca+ antiporter
Swissprot	tr\|O04034\|CCX5_ARATH	2E-165	Cation/calcium exchanger 5
trEMBL	tr\|B9RF35\|B9RF35_RICCO	6E-180	Cation:cation antiporter, putative {ECO:0000313\|EMBL:EEF49806.1}
TAIR10	AT1G08960.1	3E-117	cation exchanger 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68423219	68427000	+
GWHAAZE00000009	mRNA	68423219	68427000	+
GWHAAZE00000009	exon	68423219	68423644	+
GWHAAZE00000009	exon	68426236	68426324	+
GWHAAZE00000009	exon	68426457	68427000	+
GWHAAZE00000009	CDS	68423219	68423644	+
GWHAAZE00000009	CDS	68426236	68426324	+
GWHAAZE00000009	CDS	68426457	68427000	+

Transcript Sequence
>GWHTAAZE032017 ATGGGGGCAGTGACCCTTTTGGCCCTCGGTAACGGTGCCCCGGATGTTTTTGCATCCGTCGCCGCTGTACGCGGGGGCCACGCCCGGACTGGTTTCGGGGCGATCCTGTCGGCTGGGACTTTCGTCTCGGCATTCGTAGTAGGTTTTGTTGCAATTTATGCTTCTCCGTTTAGTGTGGATCCGGGGGCGTTTATAAGGGATGTGTTGTTTTACTTGACTGCGGCTTTCACTTTGTTCTATGTGTATCTCAGTGGGGAGATTTTTCTTTGGCAGGCTATTGGGTTTGTTGGGTTTTATGTGTTTTTTGTTGGGTTTGTGTTTTGGATGGATTTGGGGATGAAAAAGAAGGGTGTTTTTGAAGTGGGTATTGAGGTTGAAAAGGGTTTGGTGGAGATTGGTTGTGGTAAGGGTGAGTTTATGCCAAAGATCTCAAACATATGGGAAGTTCCCATCACGCTACTTCTAAAACTCACCATCCCCCAATCCTCACCTTCGGAATGGAGCCGGTTGTACAGCTCCTCTCTAGCACTTCTCCACTTCATCTTGGAAACTGAACCACCAAAAAACGAACAAATTCCAGTGGTCTTAGCCGCATTTATAATGAGTGTATTTTGGATCTCCACCACAGCTGGTGAACTACTCAACTGCCTAGCAGCCCTCGGCTCGCTCCTCGAGGTCCCACCAGCTCTACTAGGGTTGACTGTGTTGGCGTGGGGGAACTCGGTGGGTGACCTGGTTGCTGATGTGGCAGTGGCGAAGGCGGGCCAGCCGGCTATGGCCATGGCTGGGTGCTTTGCAGGGCCCATGTTCAATATGCTGTTTGGGCTTGGGACAGCTTTGGTGATAGAGACAGCGAGTGTGTATCCGGAAGCGTATGAGCTCCGGTTCCATGTGAGTATTGCAATTGCGTTCGTCTTCTTGTTCTTGAGCTTGATGGGGTCTTTGTTGGTGGTGACTTGGTGCAGGTTTAGGGTACCTAGATTTTGGGGTTTTTGCCTTGTTGGTCTCTACTTGGCCTTCATAGCTGTAAGCCTAGTAATTGCAAAGTTCCAAGTGTGA

Network for GWHGAAZE031979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0261

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01699.25	Na_Ca_ex	4	107	1.50E-15
PF01699.25	Na_Ca_ex	196	345	1.70E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.204
	SRR3591706	second leaf	13.794
	SRR3591707	mature leaf	7.538
	SRR3591708	Shoot apex	22.599
	SRR3591709	Stem	47.078
	SRR3591710	White floral bud	16.226
	SRR3591711	White flower	20.429
	SRR3591712	Green floral bud	29.704
	SRR3591713	Yellow flower	14.563
SRP173429	SRR8316895	Juvenile bud stage	18.040
	SRR8316896	Juvenile bud stage	19.658
	SRR8316897	Juvenile bud stage	13.848
	SRR8316894	Third green stage	3.841
	SRR8316900	Third green stage	14.295
	SRR8316901	Third green stage	15.869
	SRR8316898	Complete white stage	3.616
	SRR8316899	Complete white stage	29.969
	SRR8316903	Complete white stage	6.044
	SRR8316902	Silver flowering stage	4.035
	SRR8316904	Silver flowering stage	2.418
	SRR8316905	Silver flowering stage	2.210
	SRR8316906	Gold flowering stage	4.774
	SRR8316907	Gold flowering stage	5.469
	SRR8316908	Gold flowering stage	4.253
SRP132670	SRR6706286	Control	12.989
	SRR6706287	Light intensity 50%	13.631
	SRR6706288	Light intensity 20%	14.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.257
	CNS0095593	Slightly white alabastrum(diploid) 2	14.916
	CNS0095594	Slightly white alabastrum(diploid) 3	14.348
	CNS0095595	Whole white alabastrum(diploid) 2	15.051
	CNS0095596	Whole white alabastrum(diploid) 3	7.086
	CNS0095597	Whole white alabastrum(diploid) 4	10.918
	CNS0095598	Silvery flower (diploied) 1	17.111
	CNS0095599	Silvery flower (diploied) 2	19.539
	CNS0095600	Silvery flower (diploied) 3	19.832
	CNS0095601	Golden flower (diploid) 1	20.184
	CNS0095602	Golden flower (diploid) 2	30.117
	CNS0095603	Golden flower (diploid) 3	27.449
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.963
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.258
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.191
	CNS0095610	Silvery flower (tetraploid) 1	7.097
	CNS0095611	Silvery flower (tetraploid) 2	7.125
	CNS0095612	Silvery flower (tetraploid) 3	6.467
	CNS0095613	Golden flower (tetraploid) 1	2.673
	CNS0095614	Golden flower (tetraploid) 2	5.235
	CNS0095615	Golden flower (tetraploid) 3	2.692
CRA001975	CRR073297	Stem 1	20.250
	CRR073298	Stem 2	18.770
	CRR073299	Stem 3	21.053
	CRR073300	Leaf 1	22.460
	CRR073301	Leaf 2	27.821
	CRR073302	Leaf 3	20.214
	CRR073303	Juvenile bud 1	18.297
	CRR073304	Juvenile bud 2	20.395
	CRR073305	Juvenile bud 3	25.727
	CRR073306	Third green 1	11.694
	CRR073307	Third green 2	12.820
	CRR073308	Third green 3	14.987
	CRR073309	Second white 1	7.526
	CRR073310	Second white 2	8.010
	CRR073311	Second white 3	7.442
	CRR073312	Silver flowering 1	14.070
	CRR073313	Silver flowering 2	11.875
	CRR073314	Silver flowering 3	8.612
	CRR073315	Gold flowering 1	26.664
	CRR073316	Gold flowering 2	46.610
	CRR073317	Gold flowering 3	22.572
	CRR073318	Tawny withering 1	45.380
	CRR073319	Tawny withering 2	61.056
	CRR073320	Tawny withering 3	46.845