Gene detail

Detail information of GWHGAAZE031994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP36434.1	2.3823E-147	hypothetical protein JCGZ_08703 [Jatropha curcas]
COG	YP_003830841.1	6E-16	endo-1,3(4)-beta-glucanase
Swissprot	tr\|Q38857\|XTH22_ARATH	1E-135	Xyloglucan endotransglucosylase/hydrolase protein 22 (Precursor)
trEMBL	tr\|A0A067KX47\|A0A067KX47_JATCU	9E-148	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT5G57560.1	5E-103	Xyloglucan endotransglucosylase/hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68708712	68712462	-
GWHAAZE00000009	mRNA	68708712	68712462	-
GWHAAZE00000009	exon	68712460	68712462	-
GWHAAZE00000009	exon	68712277	68712383	-
GWHAAZE00000009	exon	68710578	68710797	-
GWHAAZE00000009	exon	68709458	68709651	-
GWHAAZE00000009	exon	68708712	68709105	-
GWHAAZE00000009	CDS	68712460	68712462	-
GWHAAZE00000009	CDS	68712277	68712383	-
GWHAAZE00000009	CDS	68710578	68710797	-
GWHAAZE00000009	CDS	68709458	68709651	-
GWHAAZE00000009	CDS	68708712	68709105	-

Transcript Sequence
>GWHTAAZE032032 ATGGTTGACATTTTTATTGCACAATCAAGAACTGTGGCCCGGACCAACGTAGAAATCAAATCTGCTGATTTGTTTTCTCCTCCTAATCCCATAATCAAGAACGAAACTCGGGTGTTAGCTATACCAAATGGTACCTTTCATCAGCACTTTGAGATCACTTGGGGTGATGGCCGTGCTCAGATACTCAATGACGGCGAGCTTCTCACTCTCTCACTAGACAAATCCTCTGGATCAGGCTTCCAGTCCAAAAGTGAATACCTTTTTGGAAAAATTGATATGGACCTCAAGCTTGTCCCCGGAAACTCTGCTGGCACTGTTACCGCTTACTATTTGTCATCTGAAGGGTCGAACCACGATGAGATAGACTTTGAATTTTTGGGGAATTCAAGTGGCGAACCTTACACTCTTCACACCAATGTGTTCAGCGAAGGAAAGGGCATGAGAGAGCAGCAATTCTTCCTATGGTTTGACCCCACTGAAGATTTCCACACATATTCAATCCTTTGGAATCCTCAACGCATTGTTTTTTCTGTGGACGGCACACCCATTAGAGAATTCAAGAATGCCGAGTCACTTGGGGTTCCGTTCCCAAAGAAACAGCCAATGAGGATTTACTCGAGCCTATGGAATGCTGATGACTGGGCAACACAGGGCGGCCGGGTAAAGACCGACTGGAACGGAGCTCCCTTCATTGCTTCCTATAGAAACTTTAGTGCCGACACTTGCATTTGGTCCCACGGTTCCTCTTCTTGTAATTCGACTGCCAATTCTACAACCAAGGATTGGCTCAGACAAGGCCTAAGCCCTACCGAGCTACGAAAGTTGAGACGAGTGCGAAAGAACCATATGATATACAATTATTGCAAAGATACACAAAGATTTCCACAAGGCCCCGGCCCTGAATGCAAACTTTTGTAG

Network for GWHGAAZE031994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	47	226	3.20E-62
PF06955.13	XET_C	258	302	3.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.051
	SRR3591706	second leaf	0.302
	SRR3591707	mature leaf	1.102
	SRR3591708	Shoot apex	1.581
	SRR3591709	Stem	0.210
	SRR3591710	White floral bud	25.849
	SRR3591711	White flower	2.549
	SRR3591712	Green floral bud	8.583
	SRR3591713	Yellow flower	1.107
SRP173429	SRR8316895	Juvenile bud stage	0.893
	SRR8316896	Juvenile bud stage	3.180
	SRR8316897	Juvenile bud stage	1.759
	SRR8316894	Third green stage	1.538
	SRR8316900	Third green stage	8.520
	SRR8316901	Third green stage	8.952
	SRR8316898	Complete white stage	0.380
	SRR8316899	Complete white stage	1.756
	SRR8316903	Complete white stage	0.435
	SRR8316902	Silver flowering stage	0.935
	SRR8316904	Silver flowering stage	1.988
	SRR8316905	Silver flowering stage	0.902
	SRR8316906	Gold flowering stage	1.346
	SRR8316907	Gold flowering stage	1.376
	SRR8316908	Gold flowering stage	1.063
SRP132670	SRR6706286	Control	6.665
	SRR6706287	Light intensity 50%	7.216
	SRR6706288	Light intensity 20%	5.659
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.012
	CNS0095593	Slightly white alabastrum(diploid) 2	6.987
	CNS0095594	Slightly white alabastrum(diploid) 3	10.783
	CNS0095595	Whole white alabastrum(diploid) 2	15.353
	CNS0095596	Whole white alabastrum(diploid) 3	14.572
	CNS0095597	Whole white alabastrum(diploid) 4	20.616
	CNS0095598	Silvery flower (diploied) 1	1.857
	CNS0095599	Silvery flower (diploied) 2	5.464
	CNS0095600	Silvery flower (diploied) 3	1.634
	CNS0095601	Golden flower (diploid) 1	3.082
	CNS0095602	Golden flower (diploid) 2	2.813
	CNS0095603	Golden flower (diploid) 3	2.415
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.456
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.685
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.901
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.556
	CNS0095610	Silvery flower (tetraploid) 1	2.671
	CNS0095611	Silvery flower (tetraploid) 2	4.249
	CNS0095612	Silvery flower (tetraploid) 3	10.448
	CNS0095613	Golden flower (tetraploid) 1	2.170
	CNS0095614	Golden flower (tetraploid) 2	1.508
	CNS0095615	Golden flower (tetraploid) 3	4.395
CRA001975	CRR073297	Stem 1	4.166
	CRR073298	Stem 2	3.429
	CRR073299	Stem 3	2.951
	CRR073300	Leaf 1	7.316
	CRR073301	Leaf 2	6.235
	CRR073302	Leaf 3	5.315
	CRR073303	Juvenile bud 1	9.079
	CRR073304	Juvenile bud 2	11.725
	CRR073305	Juvenile bud 3	5.408
	CRR073306	Third green 1	11.751
	CRR073307	Third green 2	11.082
	CRR073308	Third green 3	11.689
	CRR073309	Second white 1	1.466
	CRR073310	Second white 2	2.259
	CRR073311	Second white 3	2.464
	CRR073312	Silver flowering 1	9.792
	CRR073313	Silver flowering 2	10.550
	CRR073314	Silver flowering 3	4.607
	CRR073315	Gold flowering 1	10.425
	CRR073316	Gold flowering 2	2.404
	CRR073317	Gold flowering 3	4.645
	CRR073318	Tawny withering 1	11.751
	CRR073319	Tawny withering 2	9.747
	CRR073320	Tawny withering 3	9.665