Gene detail

Detail information of GWHGAAZE032009

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009801815.1	PREDICTED: xylose isomerase [Nicotiana sylvestris]
COG	YP_004267657.1	D-xylose isomerase
Swissprot	tr\|Q9FKK7\|XYLA_ARATH	Xylose isomerase
trEMBL	tr\|A0A068U447\|A0A068U447_COFCA	Xylose isomerase {ECO:0000256\|RuleBase:RU000609}
TAIR10	AT5G57655.2	xylose isomerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68915362	68922511	+
GWHAAZE00000009	mRNA	68915362	68922511	+
GWHAAZE00000009	exon	68915362	68915480	+
GWHAAZE00000009	exon	68915894	68915977	+
GWHAAZE00000009	exon	68916389	68916510	+
GWHAAZE00000009	exon	68916616	68916690	+
GWHAAZE00000009	exon	68916822	68916951	+
GWHAAZE00000009	exon	68917283	68917374	+
GWHAAZE00000009	exon	68917718	68917768	+
GWHAAZE00000009	exon	68917981	68918057	+
GWHAAZE00000009	exon	68918149	68918203	+
GWHAAZE00000009	exon	68918923	68919024	+
GWHAAZE00000009	exon	68919151	68919202	+
GWHAAZE00000009	exon	68919372	68919417	+
GWHAAZE00000009	exon	68919517	68919572	+
GWHAAZE00000009	exon	68920269	68920320	+
GWHAAZE00000009	exon	68920719	68920798	+
GWHAAZE00000009	exon	68921041	68921111	+
GWHAAZE00000009	exon	68921283	68921323	+
GWHAAZE00000009	exon	68921688	68921787	+
GWHAAZE00000009	exon	68921885	68921956	+
GWHAAZE00000009	exon	68922151	68922228	+
GWHAAZE00000009	exon	68922476	68922511	+
GWHAAZE00000009	five_prime_UTR	68915362	68915480	+
GWHAAZE00000009	five_prime_UTR	68915894	68915977	+
GWHAAZE00000009	five_prime_UTR	68916389	68916402	+
GWHAAZE00000009	CDS	68916403	68916510	+
GWHAAZE00000009	CDS	68916616	68916690	+
GWHAAZE00000009	CDS	68916822	68916951	+
GWHAAZE00000009	CDS	68917283	68917374	+
GWHAAZE00000009	CDS	68917718	68917768	+
GWHAAZE00000009	CDS	68917981	68918057	+
GWHAAZE00000009	CDS	68918149	68918203	+
GWHAAZE00000009	CDS	68918923	68919024	+
GWHAAZE00000009	CDS	68919151	68919202	+
GWHAAZE00000009	CDS	68919372	68919417	+
GWHAAZE00000009	CDS	68919517	68919572	+
GWHAAZE00000009	CDS	68920269	68920320	+
GWHAAZE00000009	CDS	68920719	68920798	+
GWHAAZE00000009	CDS	68921041	68921111	+
GWHAAZE00000009	CDS	68921283	68921323	+
GWHAAZE00000009	CDS	68921688	68921787	+
GWHAAZE00000009	CDS	68921885	68921956	+
GWHAAZE00000009	CDS	68922151	68922228	+
GWHAAZE00000009	CDS	68922476	68922511	+

Transcript Sequence
>GWHTAAZE032047 TGGAGATTGTGATCTCGAAATTATTGATTTCTATATCAATTGTTGCTTGGATTTTTGGAATGAGAATAAGGGTTTTGGTGAATTGATTGCGAGATTGTTTTGATCACACACAGAGAAGGGGTTCAAGAAGTATTTTGACGAAGAAGATGAAGGGTGGGATTTTATTGCTGTGCCTATATATAAATTTGGTGTCCTTTTCAGTGTTGATCCGTCTTGCATGCAGATTGCTGCGAGTCCACCTACCTGTCCTGCTACTGATGTTAGTAGTGGATGCGGTGAATGGGAGGGTGAATTTTTCCCTGGCGTCCCCAAGATTAAGTACGAGGGTCCTACTACAAAGAATCCACTTGCATTTAAATGGTACAATCCCAATGAGGAGATTCTTGGGAAGAAAATGAAGGATTGGATGAGGTTTAGTGTTGCCTTTTGGCACACATTCCGAGGGACCGGAAGTGACCCTTTTGGTGCACCTACAAAGATGTGGCCATGGGAAGATGGTACCAACTCAGTGGCTATGGCCAAGAGGAGGATGAGAGCGAACTTTGAGTTCATCGAGAAGCTTGGAGTAGACAGGTGGTGCTTCCACGACAGGGACATTGCTCCAGATGGTAAAACTATTGAGGAATCTAATGCAAATTTGGATGAAGTCGTAGCTCTTGCAAAAGAACTTCAGGGTGACAAGATTCGTCCTTTATGGGGTACAGCTCAATTGTTCATGCATCCTCGCTACATGCACGGTGCCGCTACTAGCTCCGAATTAGGAGTATATGCCTATGCTGCAGCTCAGGTCAAGAAGGCCATAGAGGTGACGCATTATCTGGGGGGAGAAAATTTTGTTTTCTGGGGTGGGCGTGAAGGTTATCAATCTCTCTTGAACACTGATATGGGAAGAGAGCTTGACCATATGGCAAGATTTTTTGAAGCCGCTGTTGCCTATAAGAAGAAGATTGGATTCACTGGGACGCTTCTTATTGAACCCAAGCCTCAAGAACCTACCAAGCACCAGTATGATTGGGATGCTGCAACATCTGCTAATTTCTTGCGCAAATATGGCCTCATTGGAGAATTTAAATTAAACATTGAATGCAACCACGCTACCCTGTCAGGTCACAGCTGTCATCATGAGCTTGAAACTGCAAGAATCAATGGATTGCTAGGAAATATCGACGCCAACACTGGTGACCCTCAAGTTGGCTGGGATACGGACCAGTTTTTGATGGACGTGGCAGAAGCAACTTTGGTTATGCACTCCGTTGTCAAAAATGGAGGATTGGCACCAGGAGGATTCAATTTCGATGCCAAATTGCGTCGGGAGAGCACGGATGTTGAGGACTTGTTTATTGCTCATATTGCTGGTATGGATACCTTGGCCCGTGGTCTCCGAAATGTTGCTAAGCTCATTGAGGATGGTTCATTGGATGAGCTGGTTCGCAAGAGGTACCAGAGCTTTGACACAGAATTCGGGGCCCAAGTGGAGGCTGGAAAGGCTGATTTTGAATTGCTCGAGAAGGCTGCCAAGGAATGGGGAGAACCCAAAGCTCCTTCTGGCAAGCAGGAACTTGCAGAGATGATATTCCAGTCCGCATTATAG

Network for GWHGAAZE032009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01805	xylA	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0009045	molecular_function	xylose isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	86.775
	SRR3591706	second leaf	43.100
	SRR3591707	mature leaf	33.711
	SRR3591708	Shoot apex	89.259
	SRR3591709	Stem	61.667
	SRR3591710	White floral bud	125.206
	SRR3591711	White flower	149.468
	SRR3591712	Green floral bud	85.112
	SRR3591713	Yellow flower	465.750
SRP173429	SRR8316895	Juvenile bud stage	89.159
	SRR8316896	Juvenile bud stage	134.342
	SRR8316897	Juvenile bud stage	59.297
	SRR8316894	Third green stage	39.659
	SRR8316900	Third green stage	94.270
	SRR8316901	Third green stage	87.819
	SRR8316898	Complete white stage	50.763
	SRR8316899	Complete white stage	83.977
	SRR8316903	Complete white stage	81.627
	SRR8316902	Silver flowering stage	55.582
	SRR8316904	Silver flowering stage	78.566
	SRR8316905	Silver flowering stage	43.934
	SRR8316906	Gold flowering stage	146.201
	SRR8316907	Gold flowering stage	133.560
	SRR8316908	Gold flowering stage	120.388
SRP132670	SRR6706286	Control	131.104
	SRR6706287	Light intensity 50%	105.523
	SRR6706288	Light intensity 20%	102.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	123.732
	CNS0095593	Slightly white alabastrum(diploid) 2	78.642
	CNS0095594	Slightly white alabastrum(diploid) 3	130.469
	CNS0095595	Whole white alabastrum(diploid) 2	89.045
	CNS0095596	Whole white alabastrum(diploid) 3	106.010
	CNS0095597	Whole white alabastrum(diploid) 4	81.222
	CNS0095598	Silvery flower (diploied) 1	125.170
	CNS0095599	Silvery flower (diploied) 2	84.470
	CNS0095600	Silvery flower (diploied) 3	180.705
	CNS0095601	Golden flower (diploid) 1	153.139
	CNS0095602	Golden flower (diploid) 2	298.542
	CNS0095603	Golden flower (diploid) 3	287.942
	CNS0095604	Slightly white alabastrum(tetraploid) 1	121.935
	CNS0095605	Slightly white alabastrum(tetraploid) 2	123.927
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	101.111
	CNS0095608	Whole white alabastrum(tetraploid) 2	87.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.918
	CNS0095610	Silvery flower (tetraploid) 1	229.739
	CNS0095611	Silvery flower (tetraploid) 2	287.236
	CNS0095612	Silvery flower (tetraploid) 3	111.777
	CNS0095613	Golden flower (tetraploid) 1	267.991
	CNS0095614	Golden flower (tetraploid) 2	342.940
	CNS0095615	Golden flower (tetraploid) 3	585.599
CRA001975	CRR073297	Stem 1	174.760
	CRR073298	Stem 2	133.341
	CRR073299	Stem 3	170.313
	CRR073300	Leaf 1	106.972
	CRR073301	Leaf 2	105.915
	CRR073302	Leaf 3	112.484
	CRR073303	Juvenile bud 1	86.721
	CRR073304	Juvenile bud 2	79.001
	CRR073305	Juvenile bud 3	93.756
	CRR073306	Third green 1	62.591
	CRR073307	Third green 2	57.806
	CRR073308	Third green 3	63.769
	CRR073309	Second white 1	92.071
	CRR073310	Second white 2	76.115
	CRR073311	Second white 3	94.405
	CRR073312	Silver flowering 1	121.761
	CRR073313	Silver flowering 2	139.288
	CRR073314	Silver flowering 3	124.390
	CRR073315	Gold flowering 1	46.771
	CRR073316	Gold flowering 2	48.630
	CRR073317	Gold flowering 3	45.661
	CRR073318	Tawny withering 1	77.259
	CRR073319	Tawny withering 2	60.532
	CRR073320	Tawny withering 3	59.319