Gene detail

Detail information of GWHGAAZE032017

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011079319.1	2.1999E-117	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Sesamum indicum]
Swissprot	tr\|Q9FHH8\|COL5_ARATH	9E-98	Zinc finger protein CONSTANS-LIKE 5
trEMBL	tr\|F6GXA6\|F6GXA6_VITVI	1E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44592.1}
TAIR10	AT5G57660.1	6E-67	CONSTANS-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69058353	69060345	+
GWHAAZE00000009	mRNA	69058353	69060345	+
GWHAAZE00000009	exon	69058353	69059063	+
GWHAAZE00000009	exon	69059971	69060345	+
GWHAAZE00000009	CDS	69058353	69059063	+
GWHAAZE00000009	CDS	69059971	69060345	+

Transcript Sequence
>GWHTAAZE032055 ATGGGAATTGATGAGGACAGACGCATTAGATGTTTTCCAGCGTGGGGAGCGGCGGCAAAGCAGTGCGATTACTGCAATACGGCAGCGGCACTGCTATTCTGCCGTATGGACAAGGCGTTCATGTGCATGGCGTGCGACGCCAGGGTCCATGGCAGCCCTGCGAGTGGGGTCCACTCGCGCCACGAGCGCTTGTGGTTGTGCGAGGTATGCGAGCATGCGCCCGCCAGCGTCACCTGCAAGGCCGACGCGGCCGCGCTCTGTGTCACGTGCGACCGCGACATCCACGCTGCAAATCCCCTGGCGCGTCGCCATGAGCGCGTGCCGGTTGTCCCTTTTTACGAGACAGCCGAGTCCGTCGTGAAGTCCACAGCCGCAGCCTTCTTTGTCCCCGTAGTTGGCGATGACTCCTCCGCCACTGCTGGCGGCGGCGACGGCGGCTGTGCACCGGAGATAAAATCGGTGGAAATGTTATTTTCTGATTCGGACCAGTTGCTGGATTTTGATTTTCCGGTACCCACCACCACGCGCCACCAATATCACCACCACGATTCAGCTTCCACTGACAGCGTTGTTCCGGTGCAACCGGTGAAGCCAATTCTACAGGCGGAAACTGTAGCTCATGCTCCGGAGGTTCGTTTCGAGATTGATTTCACCAGATCCAATTTCAATTCGTACAACAACAATTATGCAGCTCAATCTCTCAGCCAAAGCGTTTCTTCATCGTCGATGGACGTCGGAGTAGTTCCAGACGGGAACTCCACGTCGGATATATCCTACCCATTTGCACTACAACTCAACAGCACATTAATGGATCCGAATAATTCTACAACCCAAAGTCAACCTACCCAATTATCTGGACTAGATCGAGAAGCTAGGGTTATGAGGTACAGAGAAAAGCGAAAGAATAGAAAATTTGAAAAAACCATACGGTATGCTTCAAGAAAGGCCTACGCTGAGACAAGACCAAGGGTCAAGGGTCGATTTGCCAAGAGGACCGACACAGACAACGAGGCGGACCGATGGTTCATCCCTAATTCGACCGGTTATATTGGTGATTCTAAATATGGAGTCGTTCCATCATTTTAA

Network for GWHGAAZE032017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	20	62	3.10E-05
PF00643.25	zf-B_box	64	109	5.80E-06
PF06203.15	CCT	289	331	2.50E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.971
	SRR3591706	second leaf	91.265
	SRR3591707	mature leaf	93.547
	SRR3591708	Shoot apex	36.308
	SRR3591709	Stem	27.833
	SRR3591710	White floral bud	40.993
	SRR3591711	White flower	82.851
	SRR3591712	Green floral bud	35.121
	SRR3591713	Yellow flower	48.726
SRP173429	SRR8316895	Juvenile bud stage	18.736
	SRR8316896	Juvenile bud stage	13.942
	SRR8316897	Juvenile bud stage	9.585
	SRR8316894	Third green stage	12.048
	SRR8316900	Third green stage	45.594
	SRR8316901	Third green stage	48.511
	SRR8316898	Complete white stage	15.546
	SRR8316899	Complete white stage	75.792
	SRR8316903	Complete white stage	19.724
	SRR8316902	Silver flowering stage	38.849
	SRR8316904	Silver flowering stage	41.816
	SRR8316905	Silver flowering stage	22.535
	SRR8316906	Gold flowering stage	50.949
	SRR8316907	Gold flowering stage	54.406
	SRR8316908	Gold flowering stage	68.545
SRP132670	SRR6706286	Control	71.901
	SRR6706287	Light intensity 50%	83.113
	SRR6706288	Light intensity 20%	89.607
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.929
	CNS0095593	Slightly white alabastrum(diploid) 2	37.802
	CNS0095594	Slightly white alabastrum(diploid) 3	25.633
	CNS0095595	Whole white alabastrum(diploid) 2	29.664
	CNS0095596	Whole white alabastrum(diploid) 3	31.712
	CNS0095597	Whole white alabastrum(diploid) 4	30.720
	CNS0095598	Silvery flower (diploied) 1	32.234
	CNS0095599	Silvery flower (diploied) 2	20.160
	CNS0095600	Silvery flower (diploied) 3	36.651
	CNS0095601	Golden flower (diploid) 1	18.797
	CNS0095602	Golden flower (diploid) 2	36.049
	CNS0095603	Golden flower (diploid) 3	36.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.743
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.760
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.395
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.499
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.832
	CNS0095610	Silvery flower (tetraploid) 1	37.252
	CNS0095611	Silvery flower (tetraploid) 2	27.787
	CNS0095612	Silvery flower (tetraploid) 3	23.719
	CNS0095613	Golden flower (tetraploid) 1	44.860
	CNS0095614	Golden flower (tetraploid) 2	45.368
	CNS0095615	Golden flower (tetraploid) 3	67.061
CRA001975	CRR073297	Stem 1	8.380
	CRR073298	Stem 2	8.804
	CRR073299	Stem 3	10.800
	CRR073300	Leaf 1	12.827
	CRR073301	Leaf 2	19.706
	CRR073302	Leaf 3	16.098
	CRR073303	Juvenile bud 1	9.158
	CRR073304	Juvenile bud 2	4.472
	CRR073305	Juvenile bud 3	8.647
	CRR073306	Third green 1	75.349
	CRR073307	Third green 2	79.128
	CRR073308	Third green 3	81.759
	CRR073309	Second white 1	65.095
	CRR073310	Second white 2	44.046
	CRR073311	Second white 3	45.392
	CRR073312	Silver flowering 1	55.113
	CRR073313	Silver flowering 2	66.399
	CRR073314	Silver flowering 3	54.264
	CRR073315	Gold flowering 1	6.637
	CRR073316	Gold flowering 2	4.503
	CRR073317	Gold flowering 3	5.369
	CRR073318	Tawny withering 1	14.222
	CRR073319	Tawny withering 2	7.024
	CRR073320	Tawny withering 3	25.490