Gene detail

Detail information of GWHGAAZE032024

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009781367.1	0	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1 [Nicotiana sylvestris]
COG	YP_005028403.1	2E-100	endopeptidase Clp ATP-binding regulatory subunit ClpX
trEMBL	tr\|K4C772\|K4C772_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g063410.2.1}
TAIR10	AT1G33360.1	1E-153	ATP-dependent Clp protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69239870	69247557	+
GWHAAZE00000009	mRNA	69239870	69247557	+
GWHAAZE00000009	exon	69239870	69240868	+
GWHAAZE00000009	exon	69241365	69241426	+
GWHAAZE00000009	exon	69241601	69241698	+
GWHAAZE00000009	exon	69241807	69241886	+
GWHAAZE00000009	exon	69242406	69242456	+
GWHAAZE00000009	exon	69243020	69243094	+
GWHAAZE00000009	exon	69243183	69243260	+
GWHAAZE00000009	exon	69244427	69244459	+
GWHAAZE00000009	exon	69245486	69245542	+
GWHAAZE00000009	exon	69246193	69246263	+
GWHAAZE00000009	exon	69246377	69246476	+
GWHAAZE00000009	exon	69246639	69246743	+
GWHAAZE00000009	exon	69247332	69247408	+
GWHAAZE00000009	exon	69247491	69247557	+
GWHAAZE00000009	CDS	69239870	69240868	+
GWHAAZE00000009	CDS	69241365	69241426	+
GWHAAZE00000009	CDS	69241601	69241698	+
GWHAAZE00000009	CDS	69241807	69241886	+
GWHAAZE00000009	CDS	69242406	69242456	+
GWHAAZE00000009	CDS	69243020	69243094	+
GWHAAZE00000009	CDS	69243183	69243260	+
GWHAAZE00000009	CDS	69244427	69244459	+
GWHAAZE00000009	CDS	69245486	69245542	+
GWHAAZE00000009	CDS	69246193	69246263	+
GWHAAZE00000009	CDS	69246377	69246476	+
GWHAAZE00000009	CDS	69246639	69246743	+
GWHAAZE00000009	CDS	69247332	69247408	+
GWHAAZE00000009	CDS	69247491	69247557	+

Transcript Sequence
>GWHTAAZE032062 ATGTCTGTGATATGGAGATGGAAGAAGGTAAGAGAAATGGCAGTGACAACTGCTTCAAGGGTTGCCCCCCCATGGTCTTCTTCTTCTAAGAACTGGAATCACCGGGGGTACGTGAATTGCCTGCACGCAGCAGCAGCGGGAGGAGGAGGAGGAGGAAGCTCTTCTTACCTACTACGTCGTAGAGAATCACTAATCGGAGTGCAAGAGAGGTACAAGTGGGACCATGGGGGTTCTTCCGACGATCAACAACACCAGACTACTACTCGCAGGATTAGGGCTGAAGCCAATTGCCCCCGTTGCTCCAAACACATGGATCTCCTCTTCTCCAATCATCGCCACCATCTAATCCATCATCTTCCTCCTAATAATAATAATAATAATAATAATAATAATCATCATCTCGATGTCTCCTCCTCCTCCAATGGCAATAATAATGACAACAATAATAACGATACCAAAGGAGGCGGGGGAGGAGGGGGACCTTATCAGGCAGTGAATCTGTGCCCCAATTGTAAGACCGCCTACTACTTTCGCCCCAACAAATTGGCCCCTCTACAGGGCAGCTTCGTGGAGATTGGGAGGGTCAAAAGCAGGGGGGATTCATCTAACAAGCAGAGAACAACTTCACCATCACCATCTGATGAAGATGATTACGGTAACAGGCTTAGGGCTTCCTTCTGGGAGACTCTGAGGTCCTACGGTGGTGAGCCTCCAGAGAATTGGCCTCCTCCCCCTCCCCCTCTGACACCGACTCCTCCTCAACCATCGTCTGTCAATAATGGGCTGGCGGTCCATACGCCTCCAGGTCCACCCTTTGCGCCTGGTGTTAATGTCATTCGCGCTGGAGGCGGAAGTAATGCCAGTGGCAATGGTGGAGGGACTGGAGAGAAGCATAGCGGGTCATGGGGCGGATCCAATTTGGGAAATAATTTGCCAACCCCAAAGGAGATCTGCCAAGGACTCGATAAGTTTGTCATTGGTCAGGACCGTGCTAAAAAGGTTCTTTCGGTGGCTGTTTATAACCACTACAAGAGAATATATCACGCCTCCTTGCAGAAAGGGTCAGGAGCAGAATTAGGGATATCGGGCACAGAAGACAATGCCGACAATGTTGAATTGGAAAAAAGCAATGTACTTTTGATGGGTCCAACTGGCTCAGGGAAAACATTACTTGCAAAAACCCTAGCTCGTTTTGTGAATGTGCCCTTTGTCATTGCTGATGCAACAACTTTAACGCAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTTACGGTTGCCGAGTTCAATGTACAAGCAGCACAACAAGGGATGATCTACATTGATGAAGTTGATAAGATAACCAAGAAGGCTGAGAGCTTAAACATTAGCAGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCACTATTGAAAATGTTGGAAGGAACTTTCTGGGACAGCACTGATCCTTGGCAGGATCAGATAGTAAATGTTCCTGAAAAAGGAGCACGGAAGCATCCTCGTGGCGATAACATTCAGATAGATACAAAAGATATTCTTTTCATTTGTGGTGGAGCGTTTGTTGATTTGGAAAAAACAATATCTGACAGACGGCAGGATTCCTCAATTGGTTTTGGAGCACCTGTTCGTGCTAACATGAGAACTAGTGCACTAACTAATGCTGCAGTAACATCATCCTTGCTAGAATCTGTGGAAAGTAGTGATCTCATAGCCTATGGCCTAATACCAGAGTTTATCGGACGCTTCCCAATTTTAGTTAGTTTGTCAGCTTTAACCGAGGACCAACTTGTTCAGATTGAACCACTGCTGCATTCTCTTCTCTTTTCTTCTTGTCTTGCAAATGGACTTTTTTTGCCTTTGAGCTCTGGTTTAGCAACCGGGCTGTTTGGGACTGAAGTAGTGGATTTGGAAGGTGATGGAGAAGCATTGAGGTGGTGA

Network for GWHGAAZE032024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	374	589	2.00E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03544	clpX, CLPX	Cell cycle - Caulobacter	map04112

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005524	molecular_function	ATP binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.027
	SRR3591706	second leaf	19.233
	SRR3591707	mature leaf	23.989
	SRR3591708	Shoot apex	21.118
	SRR3591709	Stem	36.871
	SRR3591710	White floral bud	47.659
	SRR3591711	White flower	50.050
	SRR3591712	Green floral bud	38.720
	SRR3591713	Yellow flower	48.532
SRP173429	SRR8316895	Juvenile bud stage	18.618
	SRR8316896	Juvenile bud stage	24.659
	SRR8316897	Juvenile bud stage	9.915
	SRR8316894	Third green stage	11.188
	SRR8316900	Third green stage	34.717
	SRR8316901	Third green stage	36.182
	SRR8316898	Complete white stage	18.096
	SRR8316899	Complete white stage	41.431
	SRR8316903	Complete white stage	31.978
	SRR8316902	Silver flowering stage	21.624
	SRR8316904	Silver flowering stage	27.802
	SRR8316905	Silver flowering stage	15.078
	SRR8316906	Gold flowering stage	52.705
	SRR8316907	Gold flowering stage	54.032
	SRR8316908	Gold flowering stage	51.589
SRP132670	SRR6706286	Control	29.615
	SRR6706287	Light intensity 50%	31.129
	SRR6706288	Light intensity 20%	32.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.987
	CNS0095593	Slightly white alabastrum(diploid) 2	9.344
	CNS0095594	Slightly white alabastrum(diploid) 3	10.026
	CNS0095595	Whole white alabastrum(diploid) 2	14.470
	CNS0095596	Whole white alabastrum(diploid) 3	12.449
	CNS0095597	Whole white alabastrum(diploid) 4	15.010
	CNS0095598	Silvery flower (diploied) 1	20.001
	CNS0095599	Silvery flower (diploied) 2	17.050
	CNS0095600	Silvery flower (diploied) 3	42.791
	CNS0095601	Golden flower (diploid) 1	19.898
	CNS0095602	Golden flower (diploid) 2	36.523
	CNS0095603	Golden flower (diploid) 3	38.444
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.824
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.869
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.686
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.748
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.167
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.874
	CNS0095610	Silvery flower (tetraploid) 1	41.948
	CNS0095611	Silvery flower (tetraploid) 2	43.407
	CNS0095612	Silvery flower (tetraploid) 3	38.164
	CNS0095613	Golden flower (tetraploid) 1	23.198
	CNS0095614	Golden flower (tetraploid) 2	40.434
	CNS0095615	Golden flower (tetraploid) 3	44.628
CRA001975	CRR073297	Stem 1	22.178
	CRR073298	Stem 2	20.847
	CRR073299	Stem 3	19.001
	CRR073300	Leaf 1	28.648
	CRR073301	Leaf 2	22.674
	CRR073302	Leaf 3	19.852
	CRR073303	Juvenile bud 1	21.489
	CRR073304	Juvenile bud 2	23.207
	CRR073305	Juvenile bud 3	25.748
	CRR073306	Third green 1	20.134
	CRR073307	Third green 2	13.444
	CRR073308	Third green 3	16.428
	CRR073309	Second white 1	16.147
	CRR073310	Second white 2	21.099
	CRR073311	Second white 3	20.760
	CRR073312	Silver flowering 1	20.709
	CRR073313	Silver flowering 2	15.335
	CRR073314	Silver flowering 3	16.186
	CRR073315	Gold flowering 1	13.143
	CRR073316	Gold flowering 2	17.505
	CRR073317	Gold flowering 3	12.232
	CRR073318	Tawny withering 1	17.654
	CRR073319	Tawny withering 2	13.463
	CRR073320	Tawny withering 3	13.566