Detail information of GWHGAAZE032037


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG20384.11.51709E-69RING-H2 finger ATL7 -like protein [Gossypium arboreum]
Swissprottr|Q9SN28|ATL7_ARATH1E-60RING-H2 finger protein ATL7
trEMBLtr|A0A061FJ88|A0A061FJ88_THECC1E-67RING/U-box superfamily protein, putative {ECO:0000313|EMBL:EOY16983.1}
TAIR10AT4G10150.16E-34RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6953104169533652-
GWHAAZE00000009mRNA6953104169533652-
GWHAAZE00000009exon6953104169531341-
GWHAAZE00000009exon6953311769533199-
GWHAAZE00000009exon6953336869533652-
GWHAAZE00000009CDS6953336869533652-
GWHAAZE00000009CDS6953311769533199-
GWHAAZE00000009CDS6953104169531341-
Transcript Sequence

Network for GWHGAAZE032037

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21241662.00E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.875
SRR3591706second leaf8.940
SRR3591707mature leaf9.478
SRR3591708Shoot apex10.531
SRR3591709Stem13.324
SRR3591710White floral bud2.908
SRR3591711White flower2.529
SRR3591712Green floral bud6.381
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 9.622
SRR8316896Juvenile bud stage 9.983
SRR8316897Juvenile bud stage 2.600
SRR8316894Third green stage 3.867
SRR8316900Third green stage 7.778
SRR8316901Third green stage 7.073
SRR8316898Complete white stage 1.656
SRR8316899Complete white stage 6.811
SRR8316903Complete white stage 2.232
SRR8316902Silver flowering stage0.347
SRR8316904Silver flowering stage1.260
SRR8316905Silver flowering stage0.178
SRR8316906Gold flowering stage 0.385
SRR8316907Gold flowering stage 0.895
SRR8316908Gold flowering stage 0.376
SRP132670SRR6706286Control11.892
SRR6706287Light intensity 50%11.983
SRR6706288Light intensity 20%11.138
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.283
CNS0095593Slightly white alabastrum(diploid) 26.879
CNS0095594Slightly white alabastrum(diploid) 35.345
CNS0095595Whole white alabastrum(diploid) 25.439
CNS0095596Whole white alabastrum(diploid) 35.666
CNS0095597Whole white alabastrum(diploid) 43.665
CNS0095598Silvery flower (diploied) 14.388
CNS0095599Silvery flower (diploied) 24.091
CNS0095600Silvery flower (diploied) 31.974
CNS0095601Golden flower (diploid) 13.379
CNS0095602Golden flower (diploid) 22.896
CNS0095603Golden flower (diploid) 32.092
CNS0095604Slightly white alabastrum(tetraploid) 13.947
CNS0095605Slightly white alabastrum(tetraploid) 23.485
CNS0095606Slightly white alabastrum(tetraploid) 38.967
CNS0095607Whole white alabastrum(tetraploid) 14.234
CNS0095608Whole white alabastrum(tetraploid) 21.239
CNS0095609Whole white alabastrum(tetraploid) 35.931
CNS0095610Silvery flower (tetraploid) 12.020
CNS0095611Silvery flower (tetraploid) 21.698
CNS0095612Silvery flower (tetraploid) 35.352
CNS0095613Golden flower (tetraploid) 10.122
CNS0095614Golden flower (tetraploid) 20.264
CNS0095615Golden flower (tetraploid) 30.304
CRA001975CRR073297Stem 116.919
CRR073298Stem 216.828
CRR073299Stem 318.736
CRR073300Leaf 110.114
CRR073301Leaf 213.505
CRR073302Leaf 311.813
CRR073303Juvenile bud 17.629
CRR073304Juvenile bud 27.907
CRR073305Juvenile bud 37.044
CRR073306Third green 11.197
CRR073307Third green 21.541
CRR073308Third green 31.746
CRR073309Second white 10.119
CRR073310Second white 20.325
CRR073311Second white 30.000
CRR073312Silver flowering 10.186
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 114.278
CRR073316Gold flowering 217.242
CRR073317Gold flowering 318.835
CRR073318Tawny withering 113.589
CRR073319Tawny withering 25.916
CRR073320Tawny withering 39.648