Gene detail

Detail information of GWHGAAZE032045

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11514.1	0	unnamed protein product [Coffea canephora]
COG	YP_004908734.1	1E-84	putative endoglucanase precursor
Swissprot	tr\|Q9C9H5\|GUN9_ARATH	0	Endoglucanase 9 (Precursor)
trEMBL	tr\|A0A068UTD0\|A0A068UTD0_COFCA	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G71380.1	0	cellulase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69676537	69678972	+
GWHAAZE00000009	mRNA	69676537	69678972	+
GWHAAZE00000009	exon	69676537	69676752	+
GWHAAZE00000009	exon	69677039	69677542	+
GWHAAZE00000009	exon	69677851	69678000	+
GWHAAZE00000009	exon	69678184	69678295	+
GWHAAZE00000009	exon	69678392	69678555	+
GWHAAZE00000009	exon	69678640	69678972	+
GWHAAZE00000009	CDS	69676537	69676752	+
GWHAAZE00000009	CDS	69677039	69677542	+
GWHAAZE00000009	CDS	69677851	69678000	+
GWHAAZE00000009	CDS	69678184	69678295	+
GWHAAZE00000009	CDS	69678392	69678555	+
GWHAAZE00000009	CDS	69678640	69678972	+

Transcript Sequence
>GWHTAAZE032083 ATGGCATTGAGAATGGGAGCTTCTCTTTGCCTATTCTTATTTTTTTTCACATTCTCCTTTTGGGTAAATGCCCATGGTGTTACGAACCCAAATTACATGGATGCCCTTTCAAAGTCCATCCTCTTCTTTCAGGGCCAGAGATCAGGCAAAGTCCCCAATGCCCAATCCCTCTCTTGGAGGTCCAATTCTGGCCTCTTGGATGGCTCTCAAGCCGAAGTTGATTTGATAGGAGGGTACTACGATGCAGGGGACAACGTAAAATTCAACTTCCCAATGGCTTACACCACCACAATGCTATCATGGGGCACCTTAGAACATGGCAAAAAAATGGGCCCCGAGTTAGCAAATGCTAGAGCTGCGATCAAGTGGGCCACGGACTACCTACTAAAATGTGCCAGGGCCACGCCCGGTAAGCTCTACGTTGGGGTAGGTGACCCTAATGTGGACCACAAGTGTTGGGAGAGGCCTGAGGATATGGACACGGTACGGACTGTATATTCGGTTTCGGCTAGCAATCCTGGCTCAGATGTAGCCGGGGAAACTGCCGCTGCATTAGCGTCCGCTTCTTTGGTTTTTCGGAAAGTTGACCCGACATACTCGAAATTGCTGTTGAGAACATCCAAGAGTGTGTTTCAGTTTGCAACTCAGTATAGAGGTTCTTATAGTGACTCACTTGGCTCTGCTGTTTGCCCATTTTATTGTTCCTATTCCGGATATAAGGATGAACTGTTGTGGGGAGCGGCATGGCTTTATAGAGCGACAAATGACGTTTCATACTTGAGTTTTATAAATTCTTTGGGAGCTAACGATGATACCGACATATTCAGTTGGGACAACAAATATGCCGGGGCTCGTGTTCTTTTATCAAGGAGGATGTTGGTTGGCAATGATAAGGCGTTTGATTCATTCAGACAAGAAGCTGAAAATTTCATGTGTAGGATTTTGCCTAACTCGCCTTCCTCAAGCACGCAGTATACTAAAGGGGGTCTAATGTACAAGCTAAGTGCAAGTAATCTACAATATGTGACATCTATAACTTTCTTGCTTTCCACTTATGGTAAATACATGGCCTCCGCAAAGCACACCTTTAATTGTGGAGATCTTGTGGTTACCTCAAACACACTGAGAAGTCTAGCAAAGAAACAGGTGGACTATATTTTAGGGGTGAATCCGATGCAAATGTCGTACATGGTAGGATATGGTAAAAATTATCCGAGAAGAATTCACCATAGAGGATCATCGTTGCCCTCAGTGACAAGCCACCCTCAATCCATCCGTTGTGAGGACGGTTTTCAACCCTTCTATTACACACCAAACACTAACCCTAACATTTTGACCGGAGCAATCGTGGGAGGTCCAAACCAGAACGACTTCTTCCCAGATGATCGGACGGACTACAGCCACTCGGAGCCGGCCACTTACATCAATGGTGCCATAGTTGGGTCTTTAGCATACTTAGCTGGGAGCTACAAAAGTTGA

Network for GWHGAAZE032045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	32	482	5.70E-140

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.822
	SRR3591706	second leaf	0.479
	SRR3591707	mature leaf	1.118
	SRR3591708	Shoot apex	0.598
	SRR3591709	Stem	36.961
	SRR3591710	White floral bud	1.167
	SRR3591711	White flower	0.155
	SRR3591712	Green floral bud	3.184
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.189
	SRR8316896	Juvenile bud stage	0.346
	SRR8316897	Juvenile bud stage	0.067
	SRR8316894	Third green stage	0.314
	SRR8316900	Third green stage	2.375
	SRR8316901	Third green stage	1.952
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.275
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.144
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.708
	SRR6706287	Light intensity 50%	1.854
	SRR6706288	Light intensity 20%	1.906
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.080
	CNS0095593	Slightly white alabastrum(diploid) 2	1.278
	CNS0095594	Slightly white alabastrum(diploid) 3	1.075
	CNS0095595	Whole white alabastrum(diploid) 2	3.527
	CNS0095596	Whole white alabastrum(diploid) 3	3.967
	CNS0095597	Whole white alabastrum(diploid) 4	4.304
	CNS0095598	Silvery flower (diploied) 1	0.156
	CNS0095599	Silvery flower (diploied) 2	0.248
	CNS0095600	Silvery flower (diploied) 3	0.100
	CNS0095601	Golden flower (diploid) 1	0.443
	CNS0095602	Golden flower (diploid) 2	0.082
	CNS0095603	Golden flower (diploid) 3	0.045
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.648
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.372
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.254
	CNS0095612	Silvery flower (tetraploid) 3	0.238
	CNS0095613	Golden flower (tetraploid) 1	0.117
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.039
CRA001975	CRR073297	Stem 1	3.115
	CRR073298	Stem 2	1.152
	CRR073299	Stem 3	14.222
	CRR073300	Leaf 1	1.880
	CRR073301	Leaf 2	1.171
	CRR073302	Leaf 3	1.065
	CRR073303	Juvenile bud 1	1.747
	CRR073304	Juvenile bud 2	1.492
	CRR073305	Juvenile bud 3	0.933
	CRR073306	Third green 1	0.054
	CRR073307	Third green 2	0.356
	CRR073308	Third green 3	0.406
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.020
	CRR073312	Silver flowering 1	0.065
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.599
	CRR073315	Gold flowering 1	0.461
	CRR073316	Gold flowering 2	0.188
	CRR073317	Gold flowering 3	0.299
	CRR073318	Tawny withering 1	2.115
	CRR073319	Tawny withering 2	2.107
	CRR073320	Tawny withering 3	2.505