Detail information of GWHGAAZE032053


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009760235.10PREDICTED: non-lysosomal glucosylceramidase-like isoform X2 [Nicotiana sylvestris]
COGNP_925406.17E-122hypothetical protein gll2460
trEMBLtr|B9IQ99|B9IQ99_POPTR0Non-lysosomal glucosylceramidase {ECO:0000256|PIRNR:PIRNR028944}
TAIR10AT5G49900.10Beta-glucosidase, GBA2 type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6985562669862144-
GWHAAZE00000009mRNA6985562669862144-
GWHAAZE00000009exon6985562669855920-
GWHAAZE00000009exon6985656269856852-
GWHAAZE00000009exon6985722869858158-
GWHAAZE00000009exon6985838869858449-
GWHAAZE00000009exon6985852769858599-
GWHAAZE00000009exon6985874569858812-
GWHAAZE00000009exon6985897169859152-
GWHAAZE00000009exon6985931769859461-
GWHAAZE00000009exon6985955769859595-
GWHAAZE00000009exon6985977569859830-
GWHAAZE00000009exon6986007569860128-
GWHAAZE00000009exon6986021569860318-
GWHAAZE00000009exon6986042269860522-
GWHAAZE00000009exon6986083369860903-
GWHAAZE00000009exon6986114969861248-
GWHAAZE00000009exon6986135469861424-
GWHAAZE00000009exon6986154069861596-
GWHAAZE00000009exon6986184569861949-
GWHAAZE00000009exon6986213969862144-
GWHAAZE00000009CDS6986213969862144-
GWHAAZE00000009CDS6986184569861949-
GWHAAZE00000009CDS6986154069861596-
GWHAAZE00000009CDS6986135469861424-
GWHAAZE00000009CDS6986114969861248-
GWHAAZE00000009CDS6986083369860903-
GWHAAZE00000009CDS6986042269860522-
GWHAAZE00000009CDS6986021569860318-
GWHAAZE00000009CDS6986007569860128-
GWHAAZE00000009CDS6985977569859830-
GWHAAZE00000009CDS6985955769859595-
GWHAAZE00000009CDS6985931769859461-
GWHAAZE00000009CDS6985897169859152-
GWHAAZE00000009CDS6985874569858812-
GWHAAZE00000009CDS6985852769858599-
GWHAAZE00000009CDS6985838869858449-
GWHAAZE00000009CDS6985722869858158-
GWHAAZE00000009CDS6985656269856852-
GWHAAZE00000009CDS6985562669855920-
Transcript Sequence

Network for GWHGAAZE032053

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12215.9Glyco_hydr_116N733918.40E-105
PF04685.14DUF6085088689.40E-157
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17108GBA2 Metabolic pathways map01100
Sphingolipid metabolismmap00600
Other glycan degradationmap00511

Gene Ontology

GO term OntologyName
GO:0006680biological_processglucosylceramide catabolic process
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004348molecular_functionglucosylceramidase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE032053.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.971
SRR3591706second leaf5.743
SRR3591707mature leaf3.780
SRR3591708Shoot apex7.249
SRR3591709Stem95.648
SRR3591710White floral bud4.783
SRR3591711White flower2.831
SRR3591712Green floral bud3.297
SRR3591713Yellow flower4.393
SRP173429 SRR8316895Juvenile bud stage 12.953
SRR8316896Juvenile bud stage 12.029
SRR8316897Juvenile bud stage 3.187
SRR8316894Third green stage 1.932
SRR8316900Third green stage 4.613
SRR8316901Third green stage 6.841
SRR8316898Complete white stage 3.217
SRR8316899Complete white stage 10.503
SRR8316903Complete white stage 5.611
SRR8316902Silver flowering stage0.903
SRR8316904Silver flowering stage1.787
SRR8316905Silver flowering stage0.922
SRR8316906Gold flowering stage 5.114
SRR8316907Gold flowering stage 4.018
SRR8316908Gold flowering stage 6.176
SRP132670SRR6706286Control4.957
SRR6706287Light intensity 50%4.706
SRR6706288Light intensity 20%4.751
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.001
CNS0095593Slightly white alabastrum(diploid) 25.737
CNS0095594Slightly white alabastrum(diploid) 36.756
CNS0095595Whole white alabastrum(diploid) 23.036
CNS0095596Whole white alabastrum(diploid) 33.169
CNS0095597Whole white alabastrum(diploid) 43.087
CNS0095598Silvery flower (diploied) 16.932
CNS0095599Silvery flower (diploied) 25.986
CNS0095600Silvery flower (diploied) 32.921
CNS0095601Golden flower (diploid) 14.403
CNS0095602Golden flower (diploid) 23.845
CNS0095603Golden flower (diploid) 33.131
CNS0095604Slightly white alabastrum(tetraploid) 13.709
CNS0095605Slightly white alabastrum(tetraploid) 23.375
CNS0095606Slightly white alabastrum(tetraploid) 37.331
CNS0095607Whole white alabastrum(tetraploid) 12.860
CNS0095608Whole white alabastrum(tetraploid) 22.793
CNS0095609Whole white alabastrum(tetraploid) 33.434
CNS0095610Silvery flower (tetraploid) 12.849
CNS0095611Silvery flower (tetraploid) 23.270
CNS0095612Silvery flower (tetraploid) 32.456
CNS0095613Golden flower (tetraploid) 13.908
CNS0095614Golden flower (tetraploid) 25.944
CNS0095615Golden flower (tetraploid) 31.388
CRA001975CRR073297Stem 116.326
CRR073298Stem 28.504
CRR073299Stem 35.316
CRR073300Leaf 14.454
CRR073301Leaf 24.900
CRR073302Leaf 31.993
CRR073303Juvenile bud 11.207
CRR073304Juvenile bud 21.207
CRR073305Juvenile bud 32.192
CRR073306Third green 10.070
CRR073307Third green 20.404
CRR073308Third green 30.627
CRR073309Second white 10.145
CRR073310Second white 20.031
CRR073311Second white 30.288
CRR073312Silver flowering 10.469
CRR073313Silver flowering 20.341
CRR073314Silver flowering 31.323
CRR073315Gold flowering 11.462
CRR073316Gold flowering 22.259
CRR073317Gold flowering 31.741
CRR073318Tawny withering 116.965
CRR073319Tawny withering 217.977
CRR073320Tawny withering 315.486