Gene detail

Detail information of GWHGAAZE032069

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006363662.1	0	PREDICTED: probable serine/threonine-protein kinase At1g09600-like [Solanum tuberosum]
COG	YP_003371239.1	6E-25	serine/threonine protein kinase
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|M1CNT7\|M1CNT7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400071458}
TAIR10	AT1G71530.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70055184	70059772	+
GWHAAZE00000009	mRNA	70055184	70059772	+
GWHAAZE00000009	exon	70055184	70055666	+
GWHAAZE00000009	exon	70056244	70056531	+
GWHAAZE00000009	exon	70056616	70056933	+
GWHAAZE00000009	exon	70057640	70057867	+
GWHAAZE00000009	exon	70058065	70058165	+
GWHAAZE00000009	exon	70058303	70058387	+
GWHAAZE00000009	exon	70058911	70059237	+
GWHAAZE00000009	exon	70059557	70059772	+
GWHAAZE00000009	CDS	70055184	70055666	+
GWHAAZE00000009	CDS	70056244	70056531	+
GWHAAZE00000009	CDS	70056616	70056933	+
GWHAAZE00000009	CDS	70057640	70057867	+
GWHAAZE00000009	CDS	70058065	70058165	+
GWHAAZE00000009	CDS	70058303	70058387	+
GWHAAZE00000009	CDS	70058911	70059237	+
GWHAAZE00000009	CDS	70059557	70059772	+

Transcript Sequence
>GWHTAAZE032107 ATGGGCTGCCTTTGCTCGAAAGAAAGAGATCCGAATGATTATGTTAATGGAGAAGATAAGGAGAAAGAACTAAATAAGTCTACAGTATTGGTGGTTGCTCCCTCAAATGGAGGGGAGGTTATAGTAAATGTAGTTAAAGCTAATAACAACAACGATGGATCTGTTCGTAATTCAGTACTTCAATCTCAGCCAACAGCAGTACAAGCTGAAACAGGCTCCATTCATTCTGCAAAGGATGATGACGAGAAGAAGATGAGAATCGTTGAAAGACCCAAAGATGGGCATATAAGACGGGCCACTTTGGATTTGAAAGCAAATGGAGGTCACCAAAACGCAATGTGGTCTCCCATAGTCAGCTTGCCAGGTGGTGTTGAAGCAGAACAGATTGCAGCGGGATGGCCATCATGGTTAACTTCAGTTGCCGGAGAGGCTATCCAAGGGTGGCTTCCTCGAAGTGCAGAATCTTACGAGAAGTTAAACAAAATTGGCCAAGGAACTTATAGCAGTGTTTACAAAGCCCGTGACCGAAACACCAATAAAACCGTTGCAATGAAGAAGGTACGATTTGTTAATATGGATCCAGAAAGTGTTCGTTTTATGGCGAGGGAAATATACATTTTGCGGAAGCTAGACCACCCTAATGTTATGAAGCTCGAGGCTCTTGTCACTTCAAGGATTTCAGGAAGCTTGTACCTTGTTTTTGAATACATGGAGCATGATCTTGCTGGGCTTGCAGCATCACCTCAGATTAATAAGTTCACTGAACCACAGATTAAATGTTATATGAAACAGCTGCTTCTTGGACTTGAACACTGTCATAATCGTGGAATCCTTCATCGAGACATCAAGGGCTCAAACCTTCTCGTCGACGATAACGGAGTTTTGAAGATCGGTGACTTTGGCTTGGCTAACTTTTTTGAGCCCGAGCAAAAGCATCCACTGACAAGCCGTGTTGTAACTCTGTGGTATAGGGCACCTGAGCTTTTGCTTGGTGCAACCGAGTATGGAGTTGCCATTGATATGTGGAGTGCTGGCTGCATTCTAGCAGAATTGTTTGCTGGCAAGCCTATCATGCCTGGAAGAACAGAGGTCGAGCAAATGCACAAGATTTTCAAGCTCTGTGGTTCGCCATCCGAGGAATATTGGATGAAATCAAAATTACCACACGCCACTAGTTTTAAGCCTCAGCAACGTTACAGGCGCTATGTTACTGAGACATTCAAAGACTTCCCTCCCTCAGCTTTGGCTCTTGTAGATGTTCTCCTCTGTATGGAACCCGATAAACGGGGTACTGCCTCTGCGGCACTTAACAGTGAGTTCTTCACAACAAGTCCTCTTCCATGCGATCCATCGACCTTACCAAAATACCCTCCAAGCAAGGAATTTGATGCAAAGCTTCGAGATGAGGAGGCACGAAGGCGGAAAGCTGAAGGACACATGCCTGAATCTCGAAGGGTTGCCGGAGAATCCAAGGGGGTACCTAGACCAGATGCTAAGGGACAGGAACAGTCGAATAAGAGCATCAGTGAGAAGTATATCCCACAAGAGGATGGAGGCGCAGGTTTCCCAATTGAGCCACCTAGAGTGGTTGTGAAGAACGGATATGTACATTCTAATTCAGTGATTCACCCAAGTGCCGTAGGGTATGCAAGGGGGATTAAGAAAGGAGTGGGGGATGCGGGCCCCACAGGGTTTGGGAGGACATGTGGATCTGCACTACGTGAGCCGCAGTTCATAAGGCAGAGATCCTACATGCCTGTAGGCGCAATAGATTCCTCCAAGGATCATCATAAGAAGGATGAAAGAGGGGCTGCTAGTGCCAAGGAAATGAGTTACGTACCAAAAAGGAATAGGATCCTATGCTCTGGACCGTTGGTACCTCCCGGGGTAAACGTGGACGACATGCTGAAAGAGCACGAGAGACAAATTCAAGAGGCAGTTCGTAAAGCGCGTATCGAGAAGGCCAGATCTGTGCAGGAACTTCTAGGGGAGAGAAAAAATGGGCAGTCCAAAAACTCGCTGTTACTCAGTGAGGAGAAGGTTTAA

Network for GWHGAAZE032069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	156	441	1.70E-71

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.139
	SRR3591706	second leaf	0.163
	SRR3591707	mature leaf	0.331
	SRR3591708	Shoot apex	0.257
	SRR3591709	Stem	0.444
	SRR3591710	White floral bud	16.333
	SRR3591711	White flower	1.323
	SRR3591712	Green floral bud	7.419
	SRR3591713	Yellow flower	1.612
SRP173429	SRR8316895	Juvenile bud stage	0.442
	SRR8316896	Juvenile bud stage	1.411
	SRR8316897	Juvenile bud stage	0.951
	SRR8316894	Third green stage	1.353
	SRR8316900	Third green stage	5.498
	SRR8316901	Third green stage	5.919
	SRR8316898	Complete white stage	0.359
	SRR8316899	Complete white stage	0.833
	SRR8316903	Complete white stage	0.222
	SRR8316902	Silver flowering stage	0.193
	SRR8316904	Silver flowering stage	0.638
	SRR8316905	Silver flowering stage	0.181
	SRR8316906	Gold flowering stage	0.918
	SRR8316907	Gold flowering stage	0.223
	SRR8316908	Gold flowering stage	0.265
SRP132670	SRR6706286	Control	4.514
	SRR6706287	Light intensity 50%	4.417
	SRR6706288	Light intensity 20%	3.727
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.914
	CNS0095593	Slightly white alabastrum(diploid) 2	3.122
	CNS0095594	Slightly white alabastrum(diploid) 3	3.252
	CNS0095595	Whole white alabastrum(diploid) 2	10.684
	CNS0095596	Whole white alabastrum(diploid) 3	15.475
	CNS0095597	Whole white alabastrum(diploid) 4	14.578
	CNS0095598	Silvery flower (diploied) 1	0.933
	CNS0095599	Silvery flower (diploied) 2	2.716
	CNS0095600	Silvery flower (diploied) 3	0.911
	CNS0095601	Golden flower (diploid) 1	0.862
	CNS0095602	Golden flower (diploid) 2	0.768
	CNS0095603	Golden flower (diploid) 3	0.591
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.260
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.416
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.147
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.459
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.806
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.865
	CNS0095610	Silvery flower (tetraploid) 1	0.798
	CNS0095611	Silvery flower (tetraploid) 2	1.845
	CNS0095612	Silvery flower (tetraploid) 3	4.070
	CNS0095613	Golden flower (tetraploid) 1	0.639
	CNS0095614	Golden flower (tetraploid) 2	0.332
	CNS0095615	Golden flower (tetraploid) 3	2.072
CRA001975	CRR073297	Stem 1	2.521
	CRR073298	Stem 2	2.511
	CRR073299	Stem 3	1.130
	CRR073300	Leaf 1	7.935
	CRR073301	Leaf 2	6.313
	CRR073302	Leaf 3	4.098
	CRR073303	Juvenile bud 1	6.917
	CRR073304	Juvenile bud 2	6.837
	CRR073305	Juvenile bud 3	2.012
	CRR073306	Third green 1	4.997
	CRR073307	Third green 2	3.819
	CRR073308	Third green 3	4.636
	CRR073309	Second white 1	1.293
	CRR073310	Second white 2	2.006
	CRR073311	Second white 3	1.992
	CRR073312	Silver flowering 1	4.513
	CRR073313	Silver flowering 2	5.191
	CRR073314	Silver flowering 3	1.962
	CRR073315	Gold flowering 1	3.612
	CRR073316	Gold flowering 2	0.578
	CRR073317	Gold flowering 3	1.664
	CRR073318	Tawny withering 1	4.046
	CRR073319	Tawny withering 2	3.712
	CRR073320	Tawny withering 3	3.628