Gene detail

Detail information of GWHGAAZE032078

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002530768.1	calcium lipid binding protein, putative [Ricinus communis]
Swissprot	tr\|Q8L706\|SYT5_ARATH	Synaptotagmin-5
trEMBL	tr\|B9SXP9\|B9SXP9_RICCO	Calcium lipid binding protein, putative {ECO:0000313\|EMBL:EEF31628.1}
TAIR10	AT1G05500.1	Calcium-dependent lipid-binding (CaLB domain) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70130191	70140881	+
GWHAAZE00000009	mRNA	70130191	70140881	+
GWHAAZE00000009	exon	70130191	70130295	+
GWHAAZE00000009	exon	70130835	70130885	+
GWHAAZE00000009	exon	70130999	70131119	+
GWHAAZE00000009	exon	70131940	70132061	+
GWHAAZE00000009	exon	70137019	70137120	+
GWHAAZE00000009	exon	70137509	70137583	+
GWHAAZE00000009	exon	70138302	70138381	+
GWHAAZE00000009	exon	70138502	70138652	+
GWHAAZE00000009	exon	70138742	70138972	+
GWHAAZE00000009	exon	70139636	70139923	+
GWHAAZE00000009	exon	70140146	70140259	+
GWHAAZE00000009	exon	70140735	70140881	+
GWHAAZE00000009	CDS	70130191	70130295	+
GWHAAZE00000009	CDS	70130835	70130885	+
GWHAAZE00000009	CDS	70130999	70131119	+
GWHAAZE00000009	CDS	70131940	70132061	+
GWHAAZE00000009	CDS	70137019	70137120	+
GWHAAZE00000009	CDS	70137509	70137583	+
GWHAAZE00000009	CDS	70138302	70138381	+
GWHAAZE00000009	CDS	70138502	70138652	+
GWHAAZE00000009	CDS	70138742	70138972	+
GWHAAZE00000009	CDS	70139636	70139923	+
GWHAAZE00000009	CDS	70140146	70140259	+
GWHAAZE00000009	CDS	70140735	70140881	+

Transcript Sequence
>GWHTAAZE032116 ATGTCTTTTGTTTTGGGTCTAGTAATCGGACTCACTGTTGGCCTTGCAATAATTGTTGGCTTTGTTCGATCCGAAAATGCTCGATCCAAGCACCGTACTCAACTTTTGAATTGGCTGAACCTTCAACTTACAAAGATCTGGCCCTATGTTAATGAGGCAGCGTCTGAGCTTATTAAGGCTAATGTGGAGCCAATTCTTGAACAATATAGACCGATTGTGTTATCCTCTTTGAAGTTTTCCAAGTTCACTCTTGGCACTGTTGCGCCACAATTTACAGGAATTTCTATTATTGAAGATGGAGGTGGTGGTATTACTATGGAGCTAGAGATGAATTGGGACGGGAATCCGAGTATAATACTTGATGTTTGTACTAGACTTGGAGTGGCATTACCTGTTCAGGTGAAGAATATTGGGTTCACTGGGGTTTTCAGGTTGATCTTCAAACCGCTGGTTGACGAGTTTCCTTGCTTCGGAGCTGTTTGCGTATCTTTAAGAGAAAAGAAGAAGCTGGATTTTACACTTAAAGTAGTTGGTGGTGATATATCGGCAATACCTGGCATTGCTGGTACTATTGAGGAAACTATAAAAGAAGCAGTCGAGGATTCAATTACATGGCCAGTCCGGAAAGTTATTCCCATTTTGCCTGGGGATTACAGTGACCTCGAGCTGAAGCCCGTTGGAGTGTTAGAGGTGAAGCTTGTACAAGCAAAGGAGTTGACAAATAAAGACATAATTGGAAAATCTGATCCTTTTGCCCAATTGTACGTACGCCCTCTACGGGACCGAATAAAAAGCAGCAAAACAATTAACAACCAGTTGAATCCAGTGTGGAATGAACATTTCGAATTTGTCGTTGAAGATGCATCCACACAACATTTGGTGGTAAAAATCCTTGATGATGAAGGGCTTCAGCCAGCTGAGCTCATTGGTTATGCTCAAATACGTCTGAGCGAACTTGAGCCTGGTAAAATTAAAGATGTGTGGTTGAAGCTGGTGAAAGATTTGGAGCTCCAAAGAGATGTTAAAAACAGAGGACAGGTACACTTGGAACTACTGTATTATCCTTATGGGATGGAAAATGGTTTCCCTAACCCCTTTGCTCCGAGTGTTTCAATGACCTCTTTAGAAAGGGTGTTTAAAAATAGTAACGAGGCTGGTGAAAATGGAAGTGAAATGAACCAGAAAAGAAGGGATGTAATAACAAGAGGAGTACTTTCGGTTACTGTGATTTCTGCTGAAGACTTGGCACCCACAGATTTAATGGGAAAGGCTGACCCCTATGTTGTGATTACCATGAAGAAAACTCAAACAAAAAACAAGACCAGGGTTGTGAATGACAATTTGAATCCAGTTTGGAATCAGAGTTTTGACTTCCTTGTTGAGGACGGATTACATGACATGCTAGTGCTTGAAGTCTGGGACCATGACACATTTGGAAAGGACTATATGGGGACATGCATCTTGACACTGACAAGGGTTATTTTGGAAGGAGAATACAAAGATTCCATTGAACTAGATGGAGCTAAATCAGGAAAACTGAACTTGCATCTCAAGTGGATGCCCCAACCAATTTACCGCGATTCGTAG

Network for GWHGAAZE032078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0112

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17047.6	SMP_LBD	35	213	2.00E-11
PF00168.31	C2	227	331	6.70E-22
PF00168.31	C2	403	500	3.30E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	molecular_function	lipid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.809
	SRR3591706	second leaf	20.937
	SRR3591707	mature leaf	19.203
	SRR3591708	Shoot apex	28.903
	SRR3591709	Stem	63.860
	SRR3591710	White floral bud	54.488
	SRR3591711	White flower	53.652
	SRR3591712	Green floral bud	28.228
	SRR3591713	Yellow flower	64.797
SRP173429	SRR8316895	Juvenile bud stage	23.199
	SRR8316896	Juvenile bud stage	29.864
	SRR8316897	Juvenile bud stage	15.315
	SRR8316894	Third green stage	12.773
	SRR8316900	Third green stage	35.004
	SRR8316901	Third green stage	34.369
	SRR8316898	Complete white stage	31.117
	SRR8316899	Complete white stage	54.558
	SRR8316903	Complete white stage	51.389
	SRR8316902	Silver flowering stage	22.128
	SRR8316904	Silver flowering stage	32.425
	SRR8316905	Silver flowering stage	13.141
	SRR8316906	Gold flowering stage	44.138
	SRR8316907	Gold flowering stage	41.821
	SRR8316908	Gold flowering stage	54.572
SRP132670	SRR6706286	Control	21.686
	SRR6706287	Light intensity 50%	21.546
	SRR6706288	Light intensity 20%	22.280
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.003
	CNS0095593	Slightly white alabastrum(diploid) 2	27.689
	CNS0095594	Slightly white alabastrum(diploid) 3	20.350
	CNS0095595	Whole white alabastrum(diploid) 2	22.905
	CNS0095596	Whole white alabastrum(diploid) 3	17.135
	CNS0095597	Whole white alabastrum(diploid) 4	18.469
	CNS0095598	Silvery flower (diploied) 1	48.336
	CNS0095599	Silvery flower (diploied) 2	40.185
	CNS0095600	Silvery flower (diploied) 3	61.026
	CNS0095601	Golden flower (diploid) 1	45.659
	CNS0095602	Golden flower (diploid) 2	63.362
	CNS0095603	Golden flower (diploid) 3	59.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.405
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.903
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.457
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.677
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.140
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.032
	CNS0095610	Silvery flower (tetraploid) 1	49.166
	CNS0095611	Silvery flower (tetraploid) 2	51.289
	CNS0095612	Silvery flower (tetraploid) 3	44.619
	CNS0095613	Golden flower (tetraploid) 1	34.830
	CNS0095614	Golden flower (tetraploid) 2	44.082
	CNS0095615	Golden flower (tetraploid) 3	54.072
CRA001975	CRR073297	Stem 1	33.466
	CRR073298	Stem 2	30.021
	CRR073299	Stem 3	24.570
	CRR073300	Leaf 1	30.036
	CRR073301	Leaf 2	23.578
	CRR073302	Leaf 3	18.503
	CRR073303	Juvenile bud 1	23.932
	CRR073304	Juvenile bud 2	18.457
	CRR073305	Juvenile bud 3	30.073
	CRR073306	Third green 1	15.754
	CRR073307	Third green 2	17.758
	CRR073308	Third green 3	19.534
	CRR073309	Second white 1	15.406
	CRR073310	Second white 2	12.627
	CRR073311	Second white 3	13.641
	CRR073312	Silver flowering 1	20.898
	CRR073313	Silver flowering 2	16.286
	CRR073314	Silver flowering 3	19.095
	CRR073315	Gold flowering 1	23.749
	CRR073316	Gold flowering 2	40.593
	CRR073317	Gold flowering 3	19.851
	CRR073318	Tawny withering 1	38.288
	CRR073319	Tawny withering 2	34.210
	CRR073320	Tawny withering 3	36.742