Gene detail

Detail information of GWHGAAZE032110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613896.1	0	PREDICTED: probable protein phosphatase 2C 27 [Nicotiana tomentosiformis]
COG	YP_003709340.1	2E-23	serine/threonine PP2C protein phosphatase
Swissprot	tr\|Q69QZ0\|P2C27_ORYSJ	2E-172	Probable protein phosphatase 2C 27
trEMBL	tr\|A0A067K1U0\|A0A067K1U0_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP30186.1}
TAIR10	AT2G25620.1	1E-92	DNA-binding protein phosphatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70683852	70687210	+
GWHAAZE00000009	mRNA	70683852	70687210	+
GWHAAZE00000009	exon	70683852	70683938	+
GWHAAZE00000009	exon	70685292	70685495	+
GWHAAZE00000009	exon	70685984	70686195	+
GWHAAZE00000009	exon	70686646	70687210	+
GWHAAZE00000009	five_prime_UTR	70683852	70683878	+
GWHAAZE00000009	CDS	70683879	70683938	+
GWHAAZE00000009	CDS	70685292	70685495	+
GWHAAZE00000009	CDS	70685984	70686195	+
GWHAAZE00000009	CDS	70686646	70687210	+

Transcript Sequence
>GWHTAAZE032148 CTCCATTCTCAATTCTTGAATATACAGATGGAGAATTGGGGAAATACCACTCCTTGTGATCTGAATAATCTGGGGTATTCATTTCCAATTGAAAGCATTTGCGAGGATACAGTAGTAGTTGCAGACAAAAAACAGAGCCAGCTAAGTAATTTCACCCCAGCCCTTCGTTCAGGCGAGTGGTCCGATATTGGAAATAGACCTTATATGGAGGATACTCATATATGTATCGCGGACCTAGCCAAGAATTTTGGTTCCAATTTATTTGGTGAGGAAGCTATATCCTTCTATGGTGTGTTTGATGGGCATGGGGGAAAGGGTGCAGCCCAGTTTGTCCGTGATCATTTACCAAGAGTCATTGTGGAAGACGCCGATTTCCCTATAGAACTTGAGAAAGTAGTCACAAGGTCTTTTGTCGAGACAGATGCTGCTTTTGCAAAGTCATGCTCTCTCGAGTCATCCCTTTCTTCTGGTACAACCGCTCTCACTGCAATGATACTCGGAAGATCTTTACTTGTAGCAAATGCCGGAGATTGCCGAGCGGTCCTATCTCGACACGGAGTGGCTATAGAGATGTCGAAAGATCACCGGCCTTGCAGTGACAGTGAAAGGACCCGAGTTGAGTCCTTGGGCGGGTTCATTGATGACGGGTATTTGAATGGGCAATTGGGTGTAACCCGGGCATTAGGCAACTGGCACATTAAAGGGCTAAAGGAAGAATTCGGTGAAAGGGTCGGTCCGTTGAGTGCTGAACCGGAACTAAAATTGATCACGCTGACAAAAGAAGACGAGTTCTTGATAATTGGGAGTGATGGGATTTGGGACGTTTTTAGAAACCAAAATGCAGTGGATTTTGTGAGGAGGAGACTGCAAGAGCACAATGACGCGAAGTTGTGCTGCAAGGAGGTAGTGGAAGAGGCAATAAAGCGGGGAGCGACTGACAATCTAACGGTGGTAATTGTTTGTTTTCACTTGGAGCCGCCTTCACAAGTGGTGGTTCAACGGTCAAGATTTAGAAGGAGCATTTCGGCTGAGGGGCTTCAAAATCTCAAATTATATCTTGCAGAATGA

Network for GWHGAAZE032110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	56	305	4.90E-67

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.264
	SRR3591706	second leaf	7.904
	SRR3591707	mature leaf	6.218
	SRR3591708	Shoot apex	7.821
	SRR3591709	Stem	12.081
	SRR3591710	White floral bud	6.182
	SRR3591711	White flower	4.238
	SRR3591712	Green floral bud	8.351
	SRR3591713	Yellow flower	0.971
SRP173429	SRR8316895	Juvenile bud stage	8.436
	SRR8316896	Juvenile bud stage	16.594
	SRR8316897	Juvenile bud stage	6.293
	SRR8316894	Third green stage	2.265
	SRR8316900	Third green stage	5.731
	SRR8316901	Third green stage	8.083
	SRR8316898	Complete white stage	1.097
	SRR8316899	Complete white stage	14.690
	SRR8316903	Complete white stage	2.180
	SRR8316902	Silver flowering stage	1.121
	SRR8316904	Silver flowering stage	1.322
	SRR8316905	Silver flowering stage	1.544
	SRR8316906	Gold flowering stage	3.873
	SRR8316907	Gold flowering stage	4.077
	SRR8316908	Gold flowering stage	3.053
SRP132670	SRR6706286	Control	7.807
	SRR6706287	Light intensity 50%	5.793
	SRR6706288	Light intensity 20%	5.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.412
	CNS0095593	Slightly white alabastrum(diploid) 2	7.507
	CNS0095594	Slightly white alabastrum(diploid) 3	3.651
	CNS0095595	Whole white alabastrum(diploid) 2	4.775
	CNS0095596	Whole white alabastrum(diploid) 3	2.049
	CNS0095597	Whole white alabastrum(diploid) 4	2.422
	CNS0095598	Silvery flower (diploied) 1	2.519
	CNS0095599	Silvery flower (diploied) 2	12.286
	CNS0095600	Silvery flower (diploied) 3	2.948
	CNS0095601	Golden flower (diploid) 1	20.661
	CNS0095602	Golden flower (diploid) 2	4.520
	CNS0095603	Golden flower (diploid) 3	5.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.597
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.670
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.477
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.349
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.098
	CNS0095610	Silvery flower (tetraploid) 1	1.769
	CNS0095611	Silvery flower (tetraploid) 2	3.720
	CNS0095612	Silvery flower (tetraploid) 3	1.583
	CNS0095613	Golden flower (tetraploid) 1	0.443
	CNS0095614	Golden flower (tetraploid) 2	1.092
	CNS0095615	Golden flower (tetraploid) 3	1.200
CRA001975	CRR073297	Stem 1	4.601
	CRR073298	Stem 2	4.231
	CRR073299	Stem 3	4.858
	CRR073300	Leaf 1	6.298
	CRR073301	Leaf 2	4.557
	CRR073302	Leaf 3	2.871
	CRR073303	Juvenile bud 1	4.003
	CRR073304	Juvenile bud 2	2.868
	CRR073305	Juvenile bud 3	4.432
	CRR073306	Third green 1	1.206
	CRR073307	Third green 2	0.576
	CRR073308	Third green 3	1.888
	CRR073309	Second white 1	2.363
	CRR073310	Second white 2	5.965
	CRR073311	Second white 3	3.620
	CRR073312	Silver flowering 1	2.370
	CRR073313	Silver flowering 2	1.023
	CRR073314	Silver flowering 3	1.487
	CRR073315	Gold flowering 1	2.953
	CRR073316	Gold flowering 2	5.877
	CRR073317	Gold flowering 3	2.802
	CRR073318	Tawny withering 1	4.600
	CRR073319	Tawny withering 2	3.795
	CRR073320	Tawny withering 3	7.163