Detail information of GWHGAAZE032113


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283518.10PREDICTED: nucleolar protein 56-like [Vitis vinifera]
COGYP_003858756.11E-57rRNA biogenesis protein Nop56/Nop58
Swissprottr|Q9MAB3|NOP5B_ARATH3E-109Probable nucleolar protein 5-2
trEMBLtr|F6GST1|F6GST1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43316.1}
TAIR10AT1G56110.10homolog of nucleolar protein NOP56

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7074007070745504-
GWHAAZE00000009mRNA7074007070745504-
GWHAAZE00000009exon7074007070740470-
GWHAAZE00000009exon7074096870741102-
GWHAAZE00000009exon7074121370741361-
GWHAAZE00000009exon7074186770742119-
GWHAAZE00000009exon7074220470742391-
GWHAAZE00000009exon7074296770743124-
GWHAAZE00000009exon7074324570743459-
GWHAAZE00000009exon7074530070745504-
GWHAAZE00000009CDS7074530070745504-
GWHAAZE00000009CDS7074324570743459-
GWHAAZE00000009CDS7074296770743124-
GWHAAZE00000009CDS7074220470742391-
GWHAAZE00000009CDS7074186770742119-
GWHAAZE00000009CDS7074121370741361-
GWHAAZE00000009CDS7074096870741102-
GWHAAZE00000009CDS7074007070740470-
Transcript Sequence

Network for GWHGAAZE032113

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0193


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08156.14NOP5NT4699.80E-19
PF01798.19Nop1774098.70E-86
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14564NOP56 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.094
SRR3591706second leaf10.579
SRR3591707mature leaf6.505
SRR3591708Shoot apex33.589
SRR3591709Stem19.678
SRR3591710White floral bud19.754
SRR3591711White flower22.066
SRR3591712Green floral bud28.891
SRR3591713Yellow flower14.952
SRP173429 SRR8316895Juvenile bud stage 26.805
SRR8316896Juvenile bud stage 36.626
SRR8316897Juvenile bud stage 20.190
SRR8316894Third green stage 13.809
SRR8316900Third green stage 29.964
SRR8316901Third green stage 27.354
SRR8316898Complete white stage 6.326
SRR8316899Complete white stage 29.369
SRR8316903Complete white stage 14.134
SRR8316902Silver flowering stage11.185
SRR8316904Silver flowering stage16.122
SRR8316905Silver flowering stage7.459
SRR8316906Gold flowering stage 19.689
SRR8316907Gold flowering stage 19.906
SRR8316908Gold flowering stage 20.661
SRP132670SRR6706286Control28.682
SRR6706287Light intensity 50%29.896
SRR6706288Light intensity 20%29.993
CNP0000432CNS0095592Slightly white alabastrum(diploid) 144.841
CNS0095593Slightly white alabastrum(diploid) 242.727
CNS0095594Slightly white alabastrum(diploid) 353.414
CNS0095595Whole white alabastrum(diploid) 237.472
CNS0095596Whole white alabastrum(diploid) 331.064
CNS0095597Whole white alabastrum(diploid) 434.880
CNS0095598Silvery flower (diploied) 135.450
CNS0095599Silvery flower (diploied) 228.424
CNS0095600Silvery flower (diploied) 316.835
CNS0095601Golden flower (diploid) 130.256
CNS0095602Golden flower (diploid) 217.094
CNS0095603Golden flower (diploid) 316.912
CNS0095604Slightly white alabastrum(tetraploid) 140.546
CNS0095605Slightly white alabastrum(tetraploid) 238.707
CNS0095606Slightly white alabastrum(tetraploid) 345.740
CNS0095607Whole white alabastrum(tetraploid) 131.260
CNS0095608Whole white alabastrum(tetraploid) 224.170
CNS0095609Whole white alabastrum(tetraploid) 333.040
CNS0095610Silvery flower (tetraploid) 124.236
CNS0095611Silvery flower (tetraploid) 215.343
CNS0095612Silvery flower (tetraploid) 319.198
CNS0095613Golden flower (tetraploid) 111.841
CNS0095614Golden flower (tetraploid) 215.810
CNS0095615Golden flower (tetraploid) 311.394
CRA001975CRR073297Stem 143.599
CRR073298Stem 238.357
CRR073299Stem 331.637
CRR073300Leaf 136.540
CRR073301Leaf 233.781
CRR073302Leaf 324.718
CRR073303Juvenile bud 124.501
CRR073304Juvenile bud 212.141
CRR073305Juvenile bud 323.012
CRR073306Third green 17.118
CRR073307Third green 25.880
CRR073308Third green 37.953
CRR073309Second white 15.301
CRR073310Second white 28.382
CRR073311Second white 37.243
CRR073312Silver flowering 13.626
CRR073313Silver flowering 25.663
CRR073314Silver flowering 35.011
CRR073315Gold flowering 17.293
CRR073316Gold flowering 216.472
CRR073317Gold flowering 33.741
CRR073318Tawny withering 124.741
CRR073319Tawny withering 229.108
CRR073320Tawny withering 329.422