Gene detail

Detail information of GWHGAAZE032115

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265494.1	0	PREDICTED: homeobox protein knotted-1-like 13 isoform X3 [Vitis vinifera]
Swissprot	tr\|O22300\|LET12_SOLLC	5E-179	Homeobox protein knotted-1-like LET12
trEMBL	tr\|F6HCJ0\|F6HCJ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49936.1}
TAIR10	AT5G25220.2	1E-136	KNOTTED1-like homeobox gene 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70774978	70782643	-
GWHAAZE00000009	mRNA	70774978	70782643	-
GWHAAZE00000009	exon	70781996	70782643	-
GWHAAZE00000009	exon	70780200	70780320	-
GWHAAZE00000009	exon	70776891	70777084	-
GWHAAZE00000009	exon	70776672	70776803	-
GWHAAZE00000009	exon	70774978	70775118	-
GWHAAZE00000009	CDS	70781996	70782643	-
GWHAAZE00000009	CDS	70780200	70780320	-
GWHAAZE00000009	CDS	70776891	70777084	-
GWHAAZE00000009	CDS	70776672	70776803	-
GWHAAZE00000009	CDS	70774978	70775118	-

Transcript Sequence
>GWHTAAZE032153 ATGGCGTTTCACGACCAAATATCTCAAGCTATGGCGCTTCAGCACTACACCGACCAGCAGTTGACCGATAACGTCGCCGTTTTGCGCGGAATATTGCCCGAGCAGCTTGCCCAGTCATCTTCGGATGCTGCCGGAAAGTCGCCGCAGCTGGCCGGACCATCGTGGATTAACAGCGCGATTCTCCGGCAACAGAGTCAGCACCACCAGTATGGTGGTGACGGTAGCTTTCTTCACTTGCAGACTACGAATTCGGACTCTTCGGCTTCGAACAACCAGTGGTTGTCACGGCCGATTCACGGTGGCGAGAACGACGATGTTCCGGTGTCCAGCGAGTCCATGATGGCGACGACTGCGATGAATAATAATAATAATCAGGAAAAGAAATTGGGAGAACGACAGAATGACAGTGATTGTAATGGCGAGGAGAGTGATTGGCAAAATGCAAAGTGTAAAGCGGATATATTAGGTCATCCTTTGTATGATCAGTTACTTTCTGCTCATGTTTCGTGTCTTCGTATTGCTACTCCGGTCGATCAGTTGCCGAGGATCGATGCGCAGTTGGCGCAGTCGCAGCATGTGGTGGCAAAGTATTCAGTTCTCGGGCATGGTAATCAGCCTCTCGATGATAAGGACCTTGATCAGTTCATGACACATTATGTTATACTGCTGTCTTCCTTTAAAGAACAATTACAACAACATGTTCGCGTCCATGCAATGGAAGCGGTCATGGCATGTTGGGAGCTCGAGCAATCATTGCAAAGCTTAACAGGGGTAGCACCAGGTGAAGGCACAGGAGCAACAATGTCGGATGATGATGATGATCAGGCAGATAGTGATACCAACTTGTTTGATGGAAGTCTTGATGCGAACGACAGCATGGGATTTGGTCCTCTTGTCCCAACCGAAAGTGAGAGGTCTTTGATGGAGCGTGTGAGGCAAGAGTTGAAACATGAACTTAAACAGGGTTACAAGGAGAAGATTGTGGACATTAGAGAGGAAATCCTACGTAAAAGAAGAGCGGGAAAACTGCCGGGTGACACCACCTCTCTCTTAAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCGACAGAGGAAGACAAAGCAAGATTGGTACAAGAAACAGGATTGCAACTAAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAAAGGAACTGGCACAGTAACCCCTCATCTTCTACTGTTCTCAAAAGCAAACGGAAGAGGTAA

Network for GWHGAAZE032115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0175

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03790.14	KNOX1	150	191	2.90E-17
PF03791.14	KNOX2	206	256	1.70E-18
PF03789.14	ELK	314	335	8.80E-07
PF05920.12	Homeobox_KN	354	393	2.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-KNOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.393
	SRR3591706	second leaf	136.355
	SRR3591707	mature leaf	179.131
	SRR3591708	Shoot apex	114.418
	SRR3591709	Stem	25.013
	SRR3591710	White floral bud	59.207
	SRR3591711	White flower	57.739
	SRR3591712	Green floral bud	61.774
	SRR3591713	Yellow flower	12.842
SRP173429	SRR8316895	Juvenile bud stage	20.149
	SRR8316896	Juvenile bud stage	25.006
	SRR8316897	Juvenile bud stage	7.500
	SRR8316894	Third green stage	10.857
	SRR8316900	Third green stage	15.209
	SRR8316901	Third green stage	20.070
	SRR8316898	Complete white stage	7.840
	SRR8316899	Complete white stage	71.124
	SRR8316903	Complete white stage	17.614
	SRR8316902	Silver flowering stage	9.830
	SRR8316904	Silver flowering stage	14.067
	SRR8316905	Silver flowering stage	6.045
	SRR8316906	Gold flowering stage	16.042
	SRR8316907	Gold flowering stage	11.892
	SRR8316908	Gold flowering stage	15.633
SRP132670	SRR6706286	Control	38.485
	SRR6706287	Light intensity 50%	36.164
	SRR6706288	Light intensity 20%	34.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.718
	CNS0095593	Slightly white alabastrum(diploid) 2	20.265
	CNS0095594	Slightly white alabastrum(diploid) 3	19.410
	CNS0095595	Whole white alabastrum(diploid) 2	26.132
	CNS0095596	Whole white alabastrum(diploid) 3	8.187
	CNS0095597	Whole white alabastrum(diploid) 4	20.267
	CNS0095598	Silvery flower (diploied) 1	133.870
	CNS0095599	Silvery flower (diploied) 2	105.259
	CNS0095600	Silvery flower (diploied) 3	37.958
	CNS0095601	Golden flower (diploid) 1	126.294
	CNS0095602	Golden flower (diploid) 2	71.078
	CNS0095603	Golden flower (diploid) 3	70.187
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.210
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.954
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.857
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.335
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.318
	CNS0095610	Silvery flower (tetraploid) 1	43.210
	CNS0095611	Silvery flower (tetraploid) 2	51.305
	CNS0095612	Silvery flower (tetraploid) 3	16.435
	CNS0095613	Golden flower (tetraploid) 1	5.564
	CNS0095614	Golden flower (tetraploid) 2	63.559
	CNS0095615	Golden flower (tetraploid) 3	9.864
CRA001975	CRR073297	Stem 1	22.636
	CRR073298	Stem 2	21.745
	CRR073299	Stem 3	21.904
	CRR073300	Leaf 1	22.749
	CRR073301	Leaf 2	23.915
	CRR073302	Leaf 3	16.244
	CRR073303	Juvenile bud 1	22.592
	CRR073304	Juvenile bud 2	16.882
	CRR073305	Juvenile bud 3	10.869
	CRR073306	Third green 1	9.369
	CRR073307	Third green 2	4.849
	CRR073308	Third green 3	12.860
	CRR073309	Second white 1	2.701
	CRR073310	Second white 2	4.743
	CRR073311	Second white 3	2.511
	CRR073312	Silver flowering 1	0.846
	CRR073313	Silver flowering 2	0.795
	CRR073314	Silver flowering 3	2.968
	CRR073315	Gold flowering 1	57.350
	CRR073316	Gold flowering 2	97.266
	CRR073317	Gold flowering 3	41.406
	CRR073318	Tawny withering 1	53.926
	CRR073319	Tawny withering 2	45.733
	CRR073320	Tawny withering 3	35.251