Gene detail

Detail information of GWHGAAZE032124

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264530.2	0	PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Vitis vinifera]
COG	YP_004775215.1	8E-49	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FII5\|TDR_ARATH	0	Leucine-rich repeat receptor-like protein kinase TDR (Precursor)
trEMBL	tr\|F6HCK1\|F6HCK1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49946.1}
TAIR10	AT5G51350.1	0	Leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71085561	71089150	+
GWHAAZE00000009	mRNA	71085561	71089150	+
GWHAAZE00000009	exon	71085561	71085591	+
GWHAAZE00000009	exon	71086276	71088552	+
GWHAAZE00000009	exon	71088795	71089150	+
GWHAAZE00000009	CDS	71085561	71085591	+
GWHAAZE00000009	CDS	71086276	71088552	+
GWHAAZE00000009	CDS	71088795	71089099	+
GWHAAZE00000009	three_prime_UTR	71089100	71089150	+

Transcript Sequence
>GWHTAAZE032162 ATGGGTGTGCATTTGGCTTCTGTGTACATGGTCTCTTCAGTCTTCACTGATCTTCTTGTTCTAAACGTCAGCCACAATTCTTTCTCTCAAAAACTTCCCATTGGGATTTTCAATCTCACTAATTTGAGGGTTTTGGATATAAGCAGAAACAATTTCTCCGGTCATTTCCCCATTGGGATTTCCAGCCTCAAGCAATTGACTATTCTTGATGCCTTCAGCAACAGCTTCTCCGGCGAGCTTCCGGCTGACTTATCGGAGCTCTGGTCACTCAAGGTACTGAATTTTGCTGGTAGTTACTTTAGTGGACCAATCCCATCAGGTTATGGGTCACTTTCCAGCCTTGAATTCATTCATTTGGCTGGGAATTTTCTCAATGGAAAGCTCCCAGAAGAACTGGGAAAATTGAATTCTCTGACCCATATGGAAATTGGGTATAATTCTTATCAAGGTACAATTCCATGGCAATTTGGTAATATGAGTGAGCTTCAATATCTTGATATTGCTGGTGCTAATCTATCTGGAACAATACCTAAAGAACTTAGTAATCTCACAAATCTTCGCACACTTTTCCTCTTTAGAAACCAACTCTCTGGTTCAATCCCAGTGGATTTTAGCAAAATCAAGAACCTCACAAACTTGGATCTTTCTGATAATTTGCTCACTGGACCAATCCCAGAAAGTTTTTCACAGTTGAAGAATTTGAAATTACTCAGCCTAATGTATAATTCCATGAATGGCACTGTCCCTCAAGGAATTGCAAATCTTCCCCTTCTTGATACTCTACTCATTTGGGACAATTTCTTCACTGGGTCACTGCCAGAAAGCTTGGGGAGGAATTCAAATCTCAAATGGGTTGATGTTTCAACAAACAATTTTGTGGGTTTGATTCCTCCTGATATTTGCTCAAATGGGTTCTTGTTCAAATTGATTCTTTTTTCGAATCAATTCTCGGGTGGATTGAACCCTAGTTTGTCAAATTGTTCATCTCTTGTTCGTCTTCGAATCGAAGATAACTTGTTTTCGGGTCGGATATCTTTGGATTTCAATGATCTTGCTGATATTGCGTATATCGATTTGTCTAGGAATAATTTTGATGGTGGGCTTCCAAATCATATAAACAAATTATCCAAGCTCGAGTATTTTAATGTGTCTGGTAATTCAAATCTTGGAGGTTTAATCCCACCAGGAACATGGTCTTTGCCAGTTCTTCAGAATTTCTCTGCTTCATATTGTAATATCACAGGAAAAATTCCTCCATTACATTCTTGCAAATCTTTGTCAGTAATTGAACTTAATGCGAACCGGTTATCAGGAACTTTCCCGGAAAATGTATCCGAATGTCATTTTCTCGAGGAATTGAACCTGGCCAACAATAACTTGACTGGTCGTGTACCTGAAGAAATTGCTAGTCTTGATTCTCTTGCTGTCTTGGACCTTTCACACAACAATTTCAACGGTCCGATACCTATGAAATTCATAAGCTCGGCAAGTTTGAGGCTTTTGAATGTATCATTCAACGATTTTTCGGGTTCAATTCCTTCGGAAAAGATTTTCCAATCAATGGGTAGTAGCGCATTTGAGGGAAATCCGAGACTATGTGGGGAGCCATTGAGGTCTTGTCATCGGGGAAAAGAAATCGCCAATGGATTGGAGTCGGGAAGCAAGAGGACTCAAAAGCTAGCTTGGGTTCTCATACTATGTGGAGTGGTGGTTCTTTTCGTCACAGTTTCAGTGTTTGGGGTATTTCATTTCATCAGAGGAAGTAAAGGGAAGTGGAAAATGGTTTCCTTTGGCGGGATTCCTCACTTCACAGCTCCCGAATTTTTGAAGAGTTTCAGTTCTGTTGAGGCCACGGAGACGATGCCAGTTTTCAAAGCGGTTCTGCCCACCGGAATAACGGTTTTGGTGAGAAAAATCCAATGGGATTCCAAGAAAATGTGTGTTATGACGGAATTCATAAAACAAATCGGACACTCGAGGCACAAGAATTTGACTAGATTGTTGGGTTTTTGCTATAATAAGAATTTGGCTTATTTGTTGTGTGATTATTTGCCTAATGGGAATTTGGCTGAGAAGATTGGGATGAAGAGAGATTGGGCAGCAAAGTACAAGATTGTGATTGGAATTGCTAGAGGACTTTGTTTCCTCCATCATGATTGTAATCCTGCAATTCCCCATGGAGATTTGAAGGCTAGCAATGTAGTTTTTGATGAAAATATGGAGCCCCATTTGGCCGAATACGGATTCAAATCTCTTGTTCAGTTGAATAATTGTTCATTCGCGCCAACAATGTCTATGATGGAAACAGGTGAGTTGTACACTGCAATAAAAGAGGAACTCTATGCGGATGTATACAACTTTGGGGAGCTCATTCTTGAAATTTTAACGAATGGTAGGCTGAAAAATGGAGTGACCATACAGAACAAACCACATGAGCTTCTTCTAAGAGAGATTTGTAACGAGAATGAAGCTGGTTCATCCAAATCACTTCAAGAAGAGATAAAACTCGTCTTTGAAGTTTCTTTGCTCTGCACTCGAAGTAGGCCATCAGATAGACCATCCATGGATGACGCTTTGAAGCTTCTATCCAGTTCAAAATCAGCAAGAAAGTAAGAGGATGAACACAAAGGTATCTGTTTCACATGACCCATTGAAGGACAATCT

Network for GWHGAAZE032124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0084

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	209	263	2.30E-08
PF13855.7	LRR_8	425	484	1.80E-08
PF07714.18	PK_Tyr_Ser-Thr	631	859	7.90E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.097
	SRR3591706	second leaf	6.777
	SRR3591707	mature leaf	3.848
	SRR3591708	Shoot apex	9.126
	SRR3591709	Stem	18.769
	SRR3591710	White floral bud	16.128
	SRR3591711	White flower	7.287
	SRR3591712	Green floral bud	16.933
	SRR3591713	Yellow flower	1.482
SRP173429	SRR8316895	Juvenile bud stage	2.126
	SRR8316896	Juvenile bud stage	3.362
	SRR8316897	Juvenile bud stage	2.038
	SRR8316894	Third green stage	2.109
	SRR8316900	Third green stage	7.788
	SRR8316901	Third green stage	5.271
	SRR8316898	Complete white stage	1.909
	SRR8316899	Complete white stage	13.262
	SRR8316903	Complete white stage	3.471
	SRR8316902	Silver flowering stage	0.284
	SRR8316904	Silver flowering stage	1.039
	SRR8316905	Silver flowering stage	0.164
	SRR8316906	Gold flowering stage	0.219
	SRR8316907	Gold flowering stage	0.261
	SRR8316908	Gold flowering stage	0.495
SRP132670	SRR6706286	Control	3.174
	SRR6706287	Light intensity 50%	4.131
	SRR6706288	Light intensity 20%	4.350
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.995
	CNS0095593	Slightly white alabastrum(diploid) 2	3.186
	CNS0095594	Slightly white alabastrum(diploid) 3	2.176
	CNS0095595	Whole white alabastrum(diploid) 2	3.470
	CNS0095596	Whole white alabastrum(diploid) 3	2.189
	CNS0095597	Whole white alabastrum(diploid) 4	1.831
	CNS0095598	Silvery flower (diploied) 1	4.414
	CNS0095599	Silvery flower (diploied) 2	2.435
	CNS0095600	Silvery flower (diploied) 3	2.245
	CNS0095601	Golden flower (diploid) 1	3.925
	CNS0095602	Golden flower (diploid) 2	3.315
	CNS0095603	Golden flower (diploid) 3	3.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.446
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.470
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.290
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.281
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.232
	CNS0095610	Silvery flower (tetraploid) 1	3.499
	CNS0095611	Silvery flower (tetraploid) 2	4.767
	CNS0095612	Silvery flower (tetraploid) 3	2.119
	CNS0095613	Golden flower (tetraploid) 1	1.169
	CNS0095614	Golden flower (tetraploid) 2	2.658
	CNS0095615	Golden flower (tetraploid) 3	0.916
CRA001975	CRR073297	Stem 1	2.119
	CRR073298	Stem 2	2.381
	CRR073299	Stem 3	2.335
	CRR073300	Leaf 1	4.148
	CRR073301	Leaf 2	3.074
	CRR073302	Leaf 3	2.179
	CRR073303	Juvenile bud 1	2.874
	CRR073304	Juvenile bud 2	2.127
	CRR073305	Juvenile bud 3	5.317
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.313
	CRR073308	Third green 3	0.435
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.284
	CRR073311	Second white 3	0.020
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.118
	CRR073314	Silver flowering 3	0.028
	CRR073315	Gold flowering 1	1.699
	CRR073316	Gold flowering 2	2.534
	CRR073317	Gold flowering 3	2.271
	CRR073318	Tawny withering 1	6.505
	CRR073319	Tawny withering 2	4.866
	CRR073320	Tawny withering 3	7.590