Gene detail

Detail information of GWHGAAZE032127

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14277.1	0	unnamed protein product [Coffea canephora]
COG	YP_003652091.1	1E-11	pentapeptide repeat-containing protein
Swissprot	tr\|Q6NQ88\|DDB2_ARATH	7E-16	Protein DAMAGED DNA-BINDING 2
trEMBL	tr\|A0A068V155\|A0A068V155_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313\|EMBL:CDP14277.1}
TAIR10	AT1G80710.1	1E-108	DROUGHT SENSITIVE 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71131802	71134573	-
GWHAAZE00000009	mRNA	71131802	71134573	-
GWHAAZE00000009	exon	71131802	71132015	-
GWHAAZE00000009	exon	71132499	71132597	-
GWHAAZE00000009	exon	71133065	71133471	-
GWHAAZE00000009	exon	71134067	71134573	-
GWHAAZE00000009	CDS	71134067	71134573	-
GWHAAZE00000009	CDS	71133065	71133471	-
GWHAAZE00000009	CDS	71132499	71132597	-
GWHAAZE00000009	CDS	71131802	71132015	-

Transcript Sequence
>GWHTAAZE032165 ATGCCACCGGATCTCGTTACTGCAGGTGGCTTACAGGATGATCTTGCGGAAACCCTAACCGAAAACCGCAAATTACAAACAACTCCAACAAAGTCCCCTAGTGAAAAGGGTCCTCTTAGTATGAGAGATGCTTATAAGGGTCAAGCCCCAGATGAGAAACTGAAACAAACAATTATGATTGCTTCAAAAAAGCCCCAATTTAGCGAAATCAAGAGCTCGGTACAGGGAATTGATGGGGAAATGAAAACTAGGGTTTTGGGTTCTGTTGATCTGGAGTCATTGAAATTGGAACCAGAGAATGTAGCTAGGGTTGTTCCGGGTAGAATAATGGCTATGCGGTTCTTTCCATGTGCCGATATGAGGGTGATTGTCGTGGGGAACAAGTCTGGGGATGTTGGATTTTGGAATGTTGATTCAGGAAACGAAGATGGGGATGGGATTTACGTGTATCATTCTCATCCGGGCCCGGTTTCAGGGATTGCAATTCATCCATTTTCCATGTCAAAGATGTTTACCTGCTGCTACGATGGATTTATTCGGTTGATGGACATTGAGAAGGAGATATTTGATTTGGCATATTCAAGTGATGATTCTTTTTTTTCTCTTTCTCAACGGCCTCATGACATGAACTCGTTATATTTTGGTGAGGGCCAAGGAGGACTAATCATTTGGGATGAGAGGGTTGGAAAATGCTCCTCGTCATGGTCTTTGCATGATTTTAGGATCAATACAATAGATTTTAACCCGGTAAACACTAACATGATGGCTACTAGTTCCACGGATGGGACTGCCTGTATTTGGGATTTGAGAAATATTGCTGCAGATAAGCCTCAGTCTCTGAAGATAGTTAGCCATGGAAGAGCTGTTCAGTCTGCTTATTTTTCACCATCCGGAAGTCTTCTTGCCACTACATGTTCTGACAACAAAGTTAGGATACTGAGTGGAGCTAATTATGACGAAATGACGATGATATCCCATTATAACCAGACAGGGAGATGGATTTCTCCATTTAGCAGAGGAATATGGGGTTGGGATGATTCATATATATTCATTGGCAATATGAAAAGAGGAGTAGATGTTATTTCCTCAGCCAAGAGCCAAACTGTTACCACCTTTATGAGCGAACACATGTCTGCAATTCCTTGCCGATTCGATGCACACCCGTACGAGGTAGGGACGCTTGCAGCAGCTACAAGTGGGGGCCAAGTGTATTTATGGACATCATAA

Network for GWHGAAZE032127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	229	268	0.023
PF00400.33	WD40	284	312	0.044

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.537
	SRR3591706	second leaf	4.361
	SRR3591707	mature leaf	4.023
	SRR3591708	Shoot apex	19.364
	SRR3591709	Stem	5.587
	SRR3591710	White floral bud	1.649
	SRR3591711	White flower	3.828
	SRR3591712	Green floral bud	2.580
	SRR3591713	Yellow flower	2.636
SRP173429	SRR8316895	Juvenile bud stage	4.703
	SRR8316896	Juvenile bud stage	3.989
	SRR8316897	Juvenile bud stage	1.713
	SRR8316894	Third green stage	0.761
	SRR8316900	Third green stage	2.558
	SRR8316901	Third green stage	1.469
	SRR8316898	Complete white stage	0.513
	SRR8316899	Complete white stage	2.348
	SRR8316903	Complete white stage	0.693
	SRR8316902	Silver flowering stage	0.481
	SRR8316904	Silver flowering stage	0.821
	SRR8316905	Silver flowering stage	0.317
	SRR8316906	Gold flowering stage	1.027
	SRR8316907	Gold flowering stage	0.740
	SRR8316908	Gold flowering stage	0.901
SRP132670	SRR6706286	Control	1.499
	SRR6706287	Light intensity 50%	1.770
	SRR6706288	Light intensity 20%	2.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.661
	CNS0095593	Slightly white alabastrum(diploid) 2	2.010
	CNS0095594	Slightly white alabastrum(diploid) 3	3.670
	CNS0095595	Whole white alabastrum(diploid) 2	1.189
	CNS0095596	Whole white alabastrum(diploid) 3	0.778
	CNS0095597	Whole white alabastrum(diploid) 4	0.428
	CNS0095598	Silvery flower (diploied) 1	3.299
	CNS0095599	Silvery flower (diploied) 2	5.341
	CNS0095600	Silvery flower (diploied) 3	2.523
	CNS0095601	Golden flower (diploid) 1	1.969
	CNS0095602	Golden flower (diploid) 2	2.321
	CNS0095603	Golden flower (diploid) 3	1.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.976
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.849
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.344
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.983
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.457
	CNS0095610	Silvery flower (tetraploid) 1	2.293
	CNS0095611	Silvery flower (tetraploid) 2	3.481
	CNS0095612	Silvery flower (tetraploid) 3	4.209
	CNS0095613	Golden flower (tetraploid) 1	0.929
	CNS0095614	Golden flower (tetraploid) 2	1.689
	CNS0095615	Golden flower (tetraploid) 3	0.721
CRA001975	CRR073297	Stem 1	6.242
	CRR073298	Stem 2	4.482
	CRR073299	Stem 3	4.603
	CRR073300	Leaf 1	0.750
	CRR073301	Leaf 2	0.557
	CRR073302	Leaf 3	1.304
	CRR073303	Juvenile bud 1	1.084
	CRR073304	Juvenile bud 2	0.852
	CRR073305	Juvenile bud 3	0.787
	CRR073306	Third green 1	0.845
	CRR073307	Third green 2	0.436
	CRR073308	Third green 3	0.445
	CRR073309	Second white 1	1.107
	CRR073310	Second white 2	1.116
	CRR073311	Second white 3	0.820
	CRR073312	Silver flowering 1	0.681
	CRR073313	Silver flowering 2	0.654
	CRR073314	Silver flowering 3	0.153
	CRR073315	Gold flowering 1	0.303
	CRR073316	Gold flowering 2	0.985
	CRR073317	Gold flowering 3	2.162
	CRR073318	Tawny withering 1	2.684
	CRR073319	Tawny withering 2	3.845
	CRR073320	Tawny withering 3	7.451