Gene detail

Detail information of GWHGAAZE032129

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010687728.1	0	PREDICTED: ATPase 8, plasma membrane-type-like [Beta vulgaris subsp. vulgaris]
COG	YP_005270382.1	6E-140	plasma-membrane proton-efflux P-type ATPase
Swissprot	tr\|Q9M2A0\|PMA8_ARATH	0	ATPase 8, plasma membrane-type
trEMBL	tr\|B9HCD3\|B9HCD3_POPTR	0	ATPase 6 family protein {ECO:0000313\|EMBL:EEE91379.1}
TAIR10	AT3G42640.1	0	H(+)-ATPase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71139123	71143325	-
GWHAAZE00000009	mRNA	71139123	71143325	-
GWHAAZE00000009	exon	71139123	71139367	-
GWHAAZE00000009	exon	71140001	71140300	-
GWHAAZE00000009	exon	71140791	71140899	-
GWHAAZE00000009	exon	71140986	71141105	-
GWHAAZE00000009	exon	71141750	71141863	-
GWHAAZE00000009	exon	71141981	71142307	-
GWHAAZE00000009	exon	71142710	71142875	-
GWHAAZE00000009	exon	71142953	71143023	-
GWHAAZE00000009	exon	71143182	71143325	-
GWHAAZE00000009	CDS	71143182	71143325	-
GWHAAZE00000009	CDS	71142953	71143023	-
GWHAAZE00000009	CDS	71142710	71142875	-
GWHAAZE00000009	CDS	71141981	71142307	-
GWHAAZE00000009	CDS	71141750	71141863	-
GWHAAZE00000009	CDS	71140986	71141105	-
GWHAAZE00000009	CDS	71140791	71140899	-
GWHAAZE00000009	CDS	71140001	71140300	-
GWHAAZE00000009	CDS	71139123	71139367	-

Transcript Sequence
>GWHTAAZE032167 ATGCAGGGGAAGCCACCAGACTGGCAAGACTTTGTTGGAATCACAGTGCTCCTCATTATAATCTCAATTATTAGTTTCATTGAAGAGAACAACGCAGGCAATGCTGCAGCTGCCCTTATGACTGGTCTTGCTCCCAAAACCAAGGTGTTGAGGGATGGAAAATGGAACGAACAAGACACGGCAATGCTTGTACCTGGAGATTTGATTAGTGTTAATGAGTCCTTGCCGGTTACTAAGAACCCTGGCAATGAAGTGTTCTCCGGTTCCACTTGTAAGCAAGGTGAGATCAAGGCTGTGGTTATTGCCACTGGTGTCCACACCTTCTTTGGCAAGGCTGCTCACCTTGTTGATAGTACAAATCAAGTCAGCCATTTCCAAAAGGTGTTGACTTCCATTGGGAACTTCTGTATTTACTCAATAGGTGTGGGTATGGTGATAGAGACTGTAGTGATGTACCCGATCGAACAACGAAAGTACAGAGAAGGAATCGACAATTTGCTAGTGCCTTTGATTGGAGGGATCCCAATTGCGATGCCGACTGTTTTGTCCGTGACAATGGCCATTGGGTCCTATCGCCTTTCGCAACAAGGTGCCATTACCAATAGGATGACTGCTATCGAGGAAATGGCTGCGATGGATGTTCTCTGTAGTGACAAGACTGGGACAATTACCCTTAACAAGTTCACTGTGGACAAGACCATGATTGAGGTTTTTCCTGGAGACATGGACAAGGACACCCCTATCCTACTCGCTGCTAGGGCTTCTAGGGTTGAAAATCAGGATGCCATTGATGCTTCAATTGTTGGGATGCTGGCCTGCTGGGCAAGGGCGGGGATCAAAGAGGTGCATTTTCTGCCCTTTAACCCAGTAGAGAAGCGCACTGCAATCAACATTGACGCTACTGGTTATTGGCATACGTCCAGCAAGGGTGCCCCAGAGCAAATTATAGAACTTTGCGATCTTAAGGAGGAAATAAGGAAGAGAGCCCTTGATATCATTGACAATTTTGCCAATCGTGGCCTTCGTTCCTTGGCTGTTGCACAACAGGTTGAGAAGACCAAGGAGAGCGTAGGAGATCCATGGGAGTTTGTTGGATTATTGCCTCTCTTCGACCCTCCAAGGCATGATAGTGCAGAGACCATTCGTAAAGCCCTTGAACTCAGTGTGAATGTTAAGATGATAACCGGTGACCAGCTTGCTATTGGGAAAGAGACAGGGCGTAGGCTTGGCATGGGCACCAACATGTACCCATCTTCCTCCCTTCTTGGCCAAAGCATGGACGAGCCTGTTGCTTTGATTCCCGTTGACAAGCTAATCGAGGAGGCTGATGGCTTTGCTGGTGTCTTCCCTGAGCACAAGTACGAGATTGTGAAGAAGTTGCAAGAGAGGAAACACATTTGCGGAATGACAGGAGATGGTGTGAATGATGCCCCCACACTTAAGAGAGCCGACATCGGTATCGCGGTGGCTGATGCAACTGACGCAGCCCAGAGCGCGTCTGACATTGTCTTGACTGAGCCGCGACTTAGTGTGATTGTGAGCGCAGTCTTAACGAGCCGGTCCATTTTCCAAAGGATGAAGAACTACACGATTTAG

Network for GWHGAAZE032129

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00122.21	E1-E2_ATPase	73	195	2.20E-24
PF00702.27	Hydrolase	212	484	6.60E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0000166	molecular_function	nucleotide binding
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.209
	SRR3591706	second leaf	0.756
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.123
	SRR3591709	Stem	0.240
	SRR3591710	White floral bud	0.292
	SRR3591711	White flower	0.077
	SRR3591712	Green floral bud	0.359
	SRR3591713	Yellow flower	0.125
SRP173429	SRR8316895	Juvenile bud stage	0.482
	SRR8316896	Juvenile bud stage	0.686
	SRR8316897	Juvenile bud stage	0.185
	SRR8316894	Third green stage	0.526
	SRR8316900	Third green stage	0.684
	SRR8316901	Third green stage	1.209
	SRR8316898	Complete white stage	0.027
	SRR8316899	Complete white stage	0.608
	SRR8316903	Complete white stage	0.267
	SRR8316902	Silver flowering stage	0.045
	SRR8316904	Silver flowering stage	0.160
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.122
	SRR8316907	Gold flowering stage	0.190
	SRR8316908	Gold flowering stage	0.063
SRP132670	SRR6706286	Control	0.803
	SRR6706287	Light intensity 50%	1.557
	SRR6706288	Light intensity 20%	1.310
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.630
	CNS0095593	Slightly white alabastrum(diploid) 2	0.432
	CNS0095594	Slightly white alabastrum(diploid) 3	0.479
	CNS0095595	Whole white alabastrum(diploid) 2	0.317
	CNS0095596	Whole white alabastrum(diploid) 3	0.303
	CNS0095597	Whole white alabastrum(diploid) 4	0.101
	CNS0095598	Silvery flower (diploied) 1	1.213
	CNS0095599	Silvery flower (diploied) 2	0.238
	CNS0095600	Silvery flower (diploied) 3	0.120
	CNS0095601	Golden flower (diploid) 1	0.267
	CNS0095602	Golden flower (diploid) 2	0.049
	CNS0095603	Golden flower (diploid) 3	0.234
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.532
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.210
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.862
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.209
	CNS0095612	Silvery flower (tetraploid) 3	0.064
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.665
	CRR073298	Stem 2	1.532
	CRR073299	Stem 3	0.932
	CRR073300	Leaf 1	1.628
	CRR073301	Leaf 2	0.736
	CRR073302	Leaf 3	1.126
	CRR073303	Juvenile bud 1	0.583
	CRR073304	Juvenile bud 2	0.147
	CRR073305	Juvenile bud 3	0.944
	CRR073306	Third green 1	0.040
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.049
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.002
	CRR073315	Gold flowering 1	0.405
	CRR073316	Gold flowering 2	0.681
	CRR073317	Gold flowering 3	0.364
	CRR073318	Tawny withering 1	0.573
	CRR073319	Tawny withering 2	0.257
	CRR073320	Tawny withering 3	0.218