Gene detail

Detail information of GWHGAAZE032134

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656576.1	7.2097E-163	PREDICTED: acidic mammalian chitinase-like [Vitis vinifera]
COG	YP_007146068.1	1E-37	chitinase
trEMBL	tr\|D7T541\|D7T541_VITVI	3E-163	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25623.3}
TAIR10	AT4G19810.1	2E-68	Glycosyl hydrolase family protein with chitinase insertion domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71182778	71184553	-
GWHAAZE00000009	mRNA	71182778	71184553	-
GWHAAZE00000009	exon	71182778	71182835	-
GWHAAZE00000009	exon	71183568	71184553	-
GWHAAZE00000009	CDS	71183568	71184553	-
GWHAAZE00000009	CDS	71182778	71182835	-

Transcript Sequence
>GWHTAAZE032172 ATGGCCTCTCACTCTTCTTCAGCAATCAAAGGAGCTTATTGGCCTTCGTGGGCTACCAATTTCCCACCATCAGCCATAAAAACGTCGCTATTCACTCACATATACTACGCGTTTTTACTTCCTAACACGGTCACCTACAAATTAGACATTGACAATTCAACAGCCTTAATGCTCGTGAACTTCACGTCAACTCTTCATTCCAAGAAACCGCCGGTAAAGACCCTTTTCTCAATCGGAGGGGGGAATGCTAATTCTTCACTGTTTTCTCAAATGGCTTCCGGTTCGTCTTCCCGAAAAAAATTCATTTATTCCACTATAGAGGTGGCAAGAAAATTTGGGTTTGATGGGATTGATCTTGATTGGGAGTTCCCTCAAACTCCTAATGATATGGAGAATTTGGGTATTTTGCTATATGAATGGCGGGCAGCTGTAAAAGCGGAGGCTAGCAGTATAGGCCGGCCTCAACTTTTACTGTCTGCAGCTACGTACTTTTCAGTAGACTTCTTTTTAGCAGAAGTCTACCGGAAGTACCCTGTTACCTCAGTCAGTAAAAATTTAGATTGGATTAATGCGATGTGTTATGACTACCATGGGTCATGGGACGTTTCAAAGACAGGCGCACAAGCGGCATTATTTGACCCAAAAAGTAATGTAACCACAAGTTACGGGCTTGGGTCATGGATCCAGGCCGGGTTTCCAAGAAAGAAGTTGATTATGGGCTTACCACTGTACGGGCGGACATGGACCCTCAAGGATCCAACGTTGCATGGAATCGGAGCGCCAGCTGTGGCTATGGGCCCCGGAATCGAAGGACAAATGCCTTATTTAGAAGTGGAGATGTTTAATGTGCAAAATAACGCCACGGTGGTATATGACGTGTCAACTGTGTCCACATATTCTGTGGCGGGAACTTCATGGATTGGGTACGATGATATCAGATCAACTACGGTGAAAATTGGATATGCTCAGGCCCTTCGACTTCGTGGCTTCAAAGATGTGGATTCTTTGAGAAATGAGATTTTGGAATTTGGAGGATTGAATTAG

Network for GWHGAAZE032134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	12	330	2.30E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.153
	SRR3591706	second leaf	0.214
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.004
	SRR3591709	Stem	0.658
	SRR3591710	White floral bud	0.108
	SRR3591711	White flower	5.182
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	29.540
SRP173429	SRR8316895	Juvenile bud stage	2.277
	SRR8316896	Juvenile bud stage	0.698
	SRR8316897	Juvenile bud stage	0.103
	SRR8316894	Third green stage	0.031
	SRR8316900	Third green stage	0.073
	SRR8316901	Third green stage	0.192
	SRR8316898	Complete white stage	0.158
	SRR8316899	Complete white stage	0.099
	SRR8316903	Complete white stage	0.092
	SRR8316902	Silver flowering stage	2.110
	SRR8316904	Silver flowering stage	1.523
	SRR8316905	Silver flowering stage	1.414
	SRR8316906	Gold flowering stage	16.347
	SRR8316907	Gold flowering stage	7.673
	SRR8316908	Gold flowering stage	10.031
SRP132670	SRR6706286	Control	0.250
	SRR6706287	Light intensity 50%	0.216
	SRR6706288	Light intensity 20%	0.165
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.405
	CNS0095593	Slightly white alabastrum(diploid) 2	0.084
	CNS0095594	Slightly white alabastrum(diploid) 3	0.847
	CNS0095595	Whole white alabastrum(diploid) 2	0.119
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.037
	CNS0095598	Silvery flower (diploied) 1	2.372
	CNS0095599	Silvery flower (diploied) 2	0.260
	CNS0095600	Silvery flower (diploied) 3	1.922
	CNS0095601	Golden flower (diploid) 1	3.772
	CNS0095602	Golden flower (diploid) 2	24.978
	CNS0095603	Golden flower (diploid) 3	24.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.086
	CNS0095610	Silvery flower (tetraploid) 1	2.051
	CNS0095611	Silvery flower (tetraploid) 2	0.301
	CNS0095612	Silvery flower (tetraploid) 3	0.156
	CNS0095613	Golden flower (tetraploid) 1	5.607
	CNS0095614	Golden flower (tetraploid) 2	2.527
	CNS0095615	Golden flower (tetraploid) 3	1.838
CRA001975	CRR073297	Stem 1	1.562
	CRR073298	Stem 2	0.351
	CRR073299	Stem 3	0.562
	CRR073300	Leaf 1	0.065
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.067
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.217
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	2.131
	CRR073310	Second white 2	3.170
	CRR073311	Second white 3	3.723
	CRR073312	Silver flowering 1	35.972
	CRR073313	Silver flowering 2	42.468
	CRR073314	Silver flowering 3	53.541
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.075
	CRR073317	Gold flowering 3	1.045
	CRR073318	Tawny withering 1	0.913
	CRR073319	Tawny withering 2	2.811
	CRR073320	Tawny withering 3	0.357