Gene detail

Detail information of GWHGAAZE032138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10189.1	1.365E-148	unnamed protein product [Coffea canephora]
COG	YP_007146068.1	7E-40	chitinase
trEMBL	tr\|A0A068UPQ0\|A0A068UPQ0_COFCA	5E-149	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10189.1}
TAIR10	AT4G19810.1	4E-105	Glycosyl hydrolase family protein with chitinase insertion domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71252038	71254142	+
GWHAAZE00000009	mRNA	71252038	71254142	+
GWHAAZE00000009	exon	71252038	71252662	+
GWHAAZE00000009	exon	71253649	71254142	+
GWHAAZE00000009	CDS	71252038	71252662	+
GWHAAZE00000009	CDS	71253649	71254142	+

Transcript Sequence
>GWHTAAZE032176 ATGGCTCCCAAAACTCTCTTCTTCCTGATCATCTTTACAACAACACTTTCTCTTTCGTATCTTCTTCACATCTCCACCGCTCAAGATGTGGTAAAAGCTGCTTACTGGTCAACGGACAGCGGCTTTGCTGCCTCCGACATAGATTCAACTCTCTTCACTCACCTCTTTTGCGCATTTGCCAATCTTGATTCTCAAACCAACCAAGTTACAATTTCCTCATCAAACAAAGCCTCTTTCGCTCAATTCACAAACACAGTCAAACTTAAAAATCCTTCCGTTAAAACCCTCCTTTCCATCGGTGGTGGTAGCTCCAATCAGTCTGTTTTCACTGCTATGGCCAGCCAATCTGCTTCTCGACAATCCTTCATCAACTCCTCAATTAGACTAGCAAGATCATATGGATTTTTCGGTATAGACCTTGATCCCGAGTTCTGGCAGTACCCATTGACCACTTCAGATATGAACAATTTGGGTTCACTCCTCGATGAGTGGCGCGCAGCAGCAGCTACCGAGGCCATAAATTCCGGCAAGCCGCGTCTAAATTTGACTGCCGCAGTTTATCTTAACCCCACCCTTCCCATCCCTAATGGCGATTATCCCATTGCAAACATAAACAGGAGTTTAGATTGGCTCAACATTATGGCCTATGACTTCTATGCACCAGCGTGGACCACACCCTGTGTGACGCACTCGCATGCGGCACTTTATGAACCATCAGGGCCGGTGAGCGGTAACTATGGTATTCGAGCTTGGGTTCAGGCTGGGATTCCTGCAAAGAAGCTTGTGTTAGGGTTGCCATTTTACGGATACGCGTGGTGTTTGATGAATGCAAGTAATCATGGGCTGTTAGCACCGGCGAATTGTGCGGCCGGTGGTGGTTATGGCGCAATGGGTTACAATCAAATTAAGGAATTTATAAATACCAATGGTAATACTACTAGAGTGTACAATGGGACACTTGTTACGGATTATTGCTATTCCGGGACAACATGGATAGCGTATGATGATATCCAAACAATCTCTGTTAAGGTTTCTTATGCTAAGCAAAATGGACTGCTTGGTTACTTTGCTTGGCATGTTGGAGTTGATAGTAGTTGGACTCTTTCTAAAACAGGTTAG

Network for GWHGAAZE032138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	33	363	7.40E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.502
	SRR3591706	second leaf	0.771
	SRR3591707	mature leaf	3.913
	SRR3591708	Shoot apex	0.706
	SRR3591709	Stem	2.411
	SRR3591710	White floral bud	3.029
	SRR3591711	White flower	5.169
	SRR3591712	Green floral bud	1.743
	SRR3591713	Yellow flower	0.901
SRP173429	SRR8316895	Juvenile bud stage	6.516
	SRR8316896	Juvenile bud stage	7.450
	SRR8316897	Juvenile bud stage	1.834
	SRR8316894	Third green stage	1.436
	SRR8316900	Third green stage	2.273
	SRR8316901	Third green stage	3.294
	SRR8316898	Complete white stage	0.752
	SRR8316899	Complete white stage	11.938
	SRR8316903	Complete white stage	3.094
	SRR8316902	Silver flowering stage	1.800
	SRR8316904	Silver flowering stage	2.155
	SRR8316905	Silver flowering stage	0.750
	SRR8316906	Gold flowering stage	2.639
	SRR8316907	Gold flowering stage	1.634
	SRR8316908	Gold flowering stage	3.310
SRP132670	SRR6706286	Control	14.718
	SRR6706287	Light intensity 50%	9.193
	SRR6706288	Light intensity 20%	7.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.842
	CNS0095593	Slightly white alabastrum(diploid) 2	3.142
	CNS0095594	Slightly white alabastrum(diploid) 3	4.550
	CNS0095595	Whole white alabastrum(diploid) 2	2.662
	CNS0095596	Whole white alabastrum(diploid) 3	1.435
	CNS0095597	Whole white alabastrum(diploid) 4	1.337
	CNS0095598	Silvery flower (diploied) 1	13.574
	CNS0095599	Silvery flower (diploied) 2	8.087
	CNS0095600	Silvery flower (diploied) 3	3.035
	CNS0095601	Golden flower (diploid) 1	11.489
	CNS0095602	Golden flower (diploid) 2	8.386
	CNS0095603	Golden flower (diploid) 3	8.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.585
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.653
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.961
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.400
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.434
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.728
	CNS0095610	Silvery flower (tetraploid) 1	0.535
	CNS0095611	Silvery flower (tetraploid) 2	1.148
	CNS0095612	Silvery flower (tetraploid) 3	1.366
	CNS0095613	Golden flower (tetraploid) 1	0.304
	CNS0095614	Golden flower (tetraploid) 2	0.742
	CNS0095615	Golden flower (tetraploid) 3	0.685
CRA001975	CRR073297	Stem 1	5.180
	CRR073298	Stem 2	6.006
	CRR073299	Stem 3	4.290
	CRR073300	Leaf 1	2.405
	CRR073301	Leaf 2	7.122
	CRR073302	Leaf 3	2.982
	CRR073303	Juvenile bud 1	1.047
	CRR073304	Juvenile bud 2	1.440
	CRR073305	Juvenile bud 3	2.099
	CRR073306	Third green 1	1.125
	CRR073307	Third green 2	1.896
	CRR073308	Third green 3	1.787
	CRR073309	Second white 1	1.041
	CRR073310	Second white 2	0.121
	CRR073311	Second white 3	0.224
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	1.317
	CRR073314	Silver flowering 3	0.441
	CRR073315	Gold flowering 1	14.239
	CRR073316	Gold flowering 2	20.755
	CRR073317	Gold flowering 3	29.963
	CRR073318	Tawny withering 1	8.072
	CRR073319	Tawny withering 2	10.579
	CRR073320	Tawny withering 3	3.494