Gene detail

Detail information of GWHGAAZE032140

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270833.2	0	PREDICTED: two-component response regulator ARR12 [Vitis vinifera]
COG	YP_001546796.1	5E-17	two component transcriptional regulator
Swissprot	tr\|P62598\|ARR12_ARATH	1E-130	Two-component response regulator ARR12
trEMBL	tr\|A0A068UNX6\|A0A068UNX6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10195.1}
TAIR10	AT2G25180.1	7E-109	response regulator 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71282497	71287596	+
GWHAAZE00000009	mRNA	71282497	71287596	+
GWHAAZE00000009	exon	71282497	71282635	+
GWHAAZE00000009	exon	71283178	71283330	+
GWHAAZE00000009	exon	71284140	71284520	+
GWHAAZE00000009	exon	71284623	71284681	+
GWHAAZE00000009	exon	71285613	71286737	+
GWHAAZE00000009	exon	71287256	71287596	+
GWHAAZE00000009	CDS	71282497	71282635	+
GWHAAZE00000009	CDS	71283178	71283330	+
GWHAAZE00000009	CDS	71284140	71284520	+
GWHAAZE00000009	CDS	71284623	71284681	+
GWHAAZE00000009	CDS	71285613	71286737	+
GWHAAZE00000009	CDS	71287256	71287327	+
GWHAAZE00000009	three_prime_UTR	71287328	71287596	+

Transcript Sequence
>GWHTAAZE032178 ATGACTATAGAGGATATTAAATCAAGTTTAGGGGTTGAAATTGACAATTTCCCAGTGGGTATGCGTATCCTTGCTGTTGATGATGATCCTACTTGTTTGATGCTATTGGATGGCCTCCTTAGAAAATGCCAGTACCAGGTTACAACTACAAGTCAGGCAATAAGAGCACTGAAAATGTTGAGAGAAAACAGAAACCAATTTGACCTAATTATCAGTGATGTTCATATGCCAGATATGGATGGTTTTAAGCTGCTTGAGCACGTTGGTCTTGAAATGGACCTACCTGTTATCATGTTGTCGGCAAATAGCGATCCAAAACTAGTAATGAAGGGGATTACACATGGTGCTTGTGACTATCTGTTGAAACCCGTTCGAATTGAGGAGCTAAGGAACATATGGCAACACGTAATCCGTAAAAAGAAAATTGATCCAAAGGCTCAAAACAATTCTACCACTCAAGACAAGGATCAAGGGAGTGAAGGTGGAGAAGGACAAACAGGTAATACGGATCAAAGTGGGAAGCTCAATAGGAAAAGAAAGGACGAGGAAGAAGAGGGTGAAGAGAACGGGTATGAAAATGATGACCCGTCAGCACAGAAGAAGCAAAGGGTAGTTTGGTCCATAGAGCTTCATAGGAAGTTTGTCGCAGCTGTTAATCAATTGGGCATCGAAAAAGCTGTTCCTAAAAGGATTCTTGATCTAATGAATGTTGAAGGGATTACTAGAGAAAATAAATATAGACTCTACCTAAAAAGGATAAGTTCAGTGGCGTCTCAACAAGCTAACATGGTTGCTGCATTAGGGGGTAAAGAGACCTCTTATTTACGAATGGGTTCCCTCGATGGACTCGGAGATTTTCGGCCATTGTCTTCTTCTGGAAGGCTCCCAAACACTGCCTTATCTTCATACTCCCCTTCTGGGATACTCGGTAGACTCAATAGCCCCGCAAGTCTGAACGTCCGTAGCCTTACTTCTTCTTCACTAATCCAACCGAATCTTGCCCAAAGCTTAAGTAACTCCACTAATTCACTTTCAAAGTTCCAGCCCGTTATTTCGTCAGCAAACGTAAATGCAGGTTTATTTCAAGGAATTTCATCTTCATTTGAGCTTGATCATTTACAGCAGAGTAACTCCACTACCCGGATCGTGGATTTCAATTCAGTTGATGACCCGAGATTCTTTACAGCTGCTAGTGCATTCACAGAGCCCAGAGTCACAATCGGTAGCTCTAGCAACTCCATAACCAACGGCCCGAGTAATCCCTTGATTTTACCACAAGGATTTCCAAATCAGTCTTTGCCTTTGAACGCTGATTCTTTCAATACTGGTACCAGTGGTTCTTGTAATGAGAATTGGCCCAGTGGTTTTCAATTGTCAAAGTTTTCGTCAAGTCCATTGCCGTTGAGTGAGCCTTTTAGTAACGGATTTTTGCCTCCTAATAGCACGAGATTCAGTGTTTCTTCATCAGCCCCGCCTATTCAAGGCAACCCAATGAATTTTTCTTCGTGTTCTACAGTTTCAGCTTCTCTTGAAGATTCAAGAGGAGAATGCCATGAAGGTTTGTTTGGTGGTGAAATTGTTCAAAACATGAACCAAACACTTGGACAACACAAAAATGATTTAGCCCAGAACTCGGGTAATGCTTTCAGCTCCTTTAACTCTCTGGCTGTTAATGGCCGATCGAACAGTAGTGGTTCAACAATCTTTCAGCATGGTGAGGTTGAAAAGTCAACCACGGAATTCAAAGGGAGGTCCAATGAAGACTATCTTTTGGGGCCGACAAAGTTGCCAGGTGGTTTTGTTCCACAGAGTTTTGATCACTCCTTGGATGATCTTATGACCGCAGTGATGAAACGGGAGCAAGAGGGGATGCCATCAATGGATGGAGAATTTGGATTCGATACTTACACTTTCGGGTCATGTATATGACTCTTTTTAGCCGCTAATTCATAGAGAAAAGAAAGAGCTGCAACAAATTGTTGGACACCCCAACGAGTTTCTGTCTATGTAATTTTATCCCCCACCCTCCTGAAAATAGTTAGTAATTTCTTCAATTTTTATCAGGATGCTAAAAATCTATGAGTCCATGGTTGCAATTACAAATGCCATGTAAGTTTAATCTTAATTTAATTATCCGAGTAGTGCCCCTCATATTTCTATTGATCAAATAATGCTGGAGGGGAATTTTAAATTTGAAA

Network for GWHGAAZE032140

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	23	132	6.90E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.561
	SRR3591706	second leaf	6.121
	SRR3591707	mature leaf	8.250
	SRR3591708	Shoot apex	11.857
	SRR3591709	Stem	18.548
	SRR3591710	White floral bud	13.788
	SRR3591711	White flower	14.900
	SRR3591712	Green floral bud	11.663
	SRR3591713	Yellow flower	8.161
SRP173429	SRR8316895	Juvenile bud stage	12.246
	SRR8316896	Juvenile bud stage	14.471
	SRR8316897	Juvenile bud stage	6.591
	SRR8316894	Third green stage	4.588
	SRR8316900	Third green stage	11.390
	SRR8316901	Third green stage	11.351
	SRR8316898	Complete white stage	5.970
	SRR8316899	Complete white stage	22.538
	SRR8316903	Complete white stage	9.154
	SRR8316902	Silver flowering stage	5.069
	SRR8316904	Silver flowering stage	8.454
	SRR8316905	Silver flowering stage	4.569
	SRR8316906	Gold flowering stage	9.872
	SRR8316907	Gold flowering stage	12.816
	SRR8316908	Gold flowering stage	10.313
SRP132670	SRR6706286	Control	9.101
	SRR6706287	Light intensity 50%	9.677
	SRR6706288	Light intensity 20%	9.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.462
	CNS0095593	Slightly white alabastrum(diploid) 2	9.149
	CNS0095594	Slightly white alabastrum(diploid) 3	9.891
	CNS0095595	Whole white alabastrum(diploid) 2	6.686
	CNS0095596	Whole white alabastrum(diploid) 3	6.032
	CNS0095597	Whole white alabastrum(diploid) 4	6.644
	CNS0095598	Silvery flower (diploied) 1	11.532
	CNS0095599	Silvery flower (diploied) 2	8.915
	CNS0095600	Silvery flower (diploied) 3	17.026
	CNS0095601	Golden flower (diploid) 1	7.230
	CNS0095602	Golden flower (diploid) 2	15.617
	CNS0095603	Golden flower (diploid) 3	15.414
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.852
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.690
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.969
	CNS0095610	Silvery flower (tetraploid) 1	11.919
	CNS0095611	Silvery flower (tetraploid) 2	12.611
	CNS0095612	Silvery flower (tetraploid) 3	14.323
	CNS0095613	Golden flower (tetraploid) 1	5.383
	CNS0095614	Golden flower (tetraploid) 2	9.312
	CNS0095615	Golden flower (tetraploid) 3	5.808
CRA001975	CRR073297	Stem 1	23.162
	CRR073298	Stem 2	17.832
	CRR073299	Stem 3	22.728
	CRR073300	Leaf 1	13.358
	CRR073301	Leaf 2	14.399
	CRR073302	Leaf 3	11.361
	CRR073303	Juvenile bud 1	14.099
	CRR073304	Juvenile bud 2	10.971
	CRR073305	Juvenile bud 3	22.385
	CRR073306	Third green 1	15.978
	CRR073307	Third green 2	13.196
	CRR073308	Third green 3	14.124
	CRR073309	Second white 1	7.916
	CRR073310	Second white 2	7.138
	CRR073311	Second white 3	6.531
	CRR073312	Silver flowering 1	5.957
	CRR073313	Silver flowering 2	5.800
	CRR073314	Silver flowering 3	4.184
	CRR073315	Gold flowering 1	7.031
	CRR073316	Gold flowering 2	8.205
	CRR073317	Gold flowering 3	8.721
	CRR073318	Tawny withering 1	12.255
	CRR073319	Tawny withering 2	8.829
	CRR073320	Tawny withering 3	12.382