Gene detail

Detail information of GWHGAAZE032143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002309328.1	1.2523E-135	putative SNARE family protein [Populus trichocarpa]
Swissprot	tr\|Q9ZRD6\|YKT61_ARATH	2E-130	VAMP-like protein YKT61 (Precursor)
trEMBL	tr\|B9HAR1\|B9HAR1_POPTR	5E-136	Putative SNARE family protein {ECO:0000313\|EMBL:EEE92851.1}
TAIR10	AT5G58060.1	1E-102	SNARE-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71328004	71334234	+
GWHAAZE00000009	mRNA	71328004	71334234	+
GWHAAZE00000009	exon	71328004	71328196	+
GWHAAZE00000009	exon	71329301	71329398	+
GWHAAZE00000009	exon	71330333	71330437	+
GWHAAZE00000009	exon	71330808	71330873	+
GWHAAZE00000009	exon	71333261	71333347	+
GWHAAZE00000009	exon	71333856	71334234	+
GWHAAZE00000009	CDS	71328004	71328196	+
GWHAAZE00000009	CDS	71329301	71329398	+
GWHAAZE00000009	CDS	71330333	71330437	+
GWHAAZE00000009	CDS	71330808	71330873	+
GWHAAZE00000009	CDS	71333261	71333347	+
GWHAAZE00000009	CDS	71333856	71333906	+
GWHAAZE00000009	three_prime_UTR	71333907	71334234	+

Transcript Sequence
>GWHTAAZE032181 ATGAAGATTACAGCGTTGTTGGTACTGAAATGCACACCGGAGGGTTCAGATCCGGTGATCCTCGCCAACGCCACCGATGTCACCCATTTCGGCTACTTCCAAAGGCCTAGCGTTCGCGAATTCATCGTCTTCGTCGGTCGCACCGTAGCTCGACGTACTCCACCTGGCCAACGACAATCGGTCCAACACGAAGAGTACAAAGTGCATTCCTATAATAGAAATGGTCTCTGTGTCTTGGGATTTATGGATGATCATTATCCAGTTCGAAGTGCTTTTTCCTTGCTCAACCAGGTTATAGATGAGTATCAAAAGTTTGCTGGTGATCGATGGAGAACTGCGCAAGCCGATAGCACTGAGTCATGGCCCTATCTGAATGAAGCTTTAACTAAATTTCAGGACCCTGCCGAGGCAGACAAGCTGTTAAAAATTCAGAGAGAATTGGATGAAACGAAAATTATCCTTCACAAGACTATTGATAGTGTTCTTGCACGAGGGGAAAAGCTGGATAGTTTGGTTGAGAAAAGTTCCGATCTCAGTGCAGCTTCTCAGATGTTTTACAAACAAGCAAAGAAAACGAACCAATGCTGCACGATACTGTAAAAAATGGCTCTGAAGAAAAAGAGATTCATTTGCTTGTTCGTCTAGTGTTAAAATACAATGATGATGTGCATCACGAAAGTGTTGTTTATATCGTTTATAGATTGTTGCGAGGTGGAAACTTTATCAGTTTCTTCCTTTTATACCTTTGGCTTTTCAAGATTAAAGGGAAAAAATGACTGAGATTGGAAATGTTTTCCCTAGTTCATGACTGAGATTGGCAATTGTTTTTCCTAGTATAAATCATACTTATTATTAGTATTTCTCGCTGTTTACAATAGCTCAGTTTCACTTTCTTGTTGATTTTATGTACATGACAAAGAAGAATTGG

Network for GWHGAAZE032143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13774.7	Longin	48	108	5.20E-10
PF00957.22	Synaptobrevin	137	194	7.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08516	YKT6	SNARE interactions in vesicular transport	map04130
K08516	YKT6	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	106.744
	SRR3591706	second leaf	44.566
	SRR3591707	mature leaf	43.961
	SRR3591708	Shoot apex	61.886
	SRR3591709	Stem	120.141
	SRR3591710	White floral bud	124.582
	SRR3591711	White flower	174.915
	SRR3591712	Green floral bud	112.098
	SRR3591713	Yellow flower	188.747
SRP173429	SRR8316895	Juvenile bud stage	49.031
	SRR8316896	Juvenile bud stage	68.539
	SRR8316897	Juvenile bud stage	37.505
	SRR8316894	Third green stage	30.458
	SRR8316900	Third green stage	95.665
	SRR8316901	Third green stage	97.604
	SRR8316898	Complete white stage	80.014
	SRR8316899	Complete white stage	147.658
	SRR8316903	Complete white stage	109.103
	SRR8316902	Silver flowering stage	72.597
	SRR8316904	Silver flowering stage	102.250
	SRR8316905	Silver flowering stage	45.568
	SRR8316906	Gold flowering stage	139.923
	SRR8316907	Gold flowering stage	136.489
	SRR8316908	Gold flowering stage	143.299
SRP132670	SRR6706286	Control	100.023
	SRR6706287	Light intensity 50%	100.350
	SRR6706288	Light intensity 20%	107.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	84.659
	CNS0095593	Slightly white alabastrum(diploid) 2	85.333
	CNS0095594	Slightly white alabastrum(diploid) 3	94.013
	CNS0095595	Whole white alabastrum(diploid) 2	82.128
	CNS0095596	Whole white alabastrum(diploid) 3	73.271
	CNS0095597	Whole white alabastrum(diploid) 4	81.133
	CNS0095598	Silvery flower (diploied) 1	84.237
	CNS0095599	Silvery flower (diploied) 2	96.780
	CNS0095600	Silvery flower (diploied) 3	169.379
	CNS0095601	Golden flower (diploid) 1	82.723
	CNS0095602	Golden flower (diploid) 2	143.197
	CNS0095603	Golden flower (diploid) 3	132.563
	CNS0095604	Slightly white alabastrum(tetraploid) 1	89.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.592
	CNS0095606	Slightly white alabastrum(tetraploid) 3	87.096
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	86.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.490
	CNS0095610	Silvery flower (tetraploid) 1	161.552
	CNS0095611	Silvery flower (tetraploid) 2	165.654
	CNS0095612	Silvery flower (tetraploid) 3	174.033
	CNS0095613	Golden flower (tetraploid) 1	166.969
	CNS0095614	Golden flower (tetraploid) 2	142.462
	CNS0095615	Golden flower (tetraploid) 3	209.977
CRA001975	CRR073297	Stem 1	95.165
	CRR073298	Stem 2	95.258
	CRR073299	Stem 3	107.081
	CRR073300	Leaf 1	99.723
	CRR073301	Leaf 2	119.429
	CRR073302	Leaf 3	118.102
	CRR073303	Juvenile bud 1	143.427
	CRR073304	Juvenile bud 2	115.752
	CRR073305	Juvenile bud 3	101.882
	CRR073306	Third green 1	146.538
	CRR073307	Third green 2	146.545
	CRR073308	Third green 3	136.698
	CRR073309	Second white 1	157.770
	CRR073310	Second white 2	147.540
	CRR073311	Second white 3	109.157
	CRR073312	Silver flowering 1	116.441
	CRR073313	Silver flowering 2	130.982
	CRR073314	Silver flowering 3	111.506
	CRR073315	Gold flowering 1	82.969
	CRR073316	Gold flowering 2	73.243
	CRR073317	Gold flowering 3	74.771
	CRR073318	Tawny withering 1	120.771
	CRR073319	Tawny withering 2	128.033
	CRR073320	Tawny withering 3	126.712