Gene detail

Detail information of GWHGAAZE032144

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009600021.1	0	PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isoform X2 [Nicotiana tomentosiformis]
COG	YP_005071699.1	1E-87	solanesyl diphosphate synthase
Swissprot	tr\|Q653T6\|SPS1_ORYSJ	0	Solanesyl-diphosphate synthase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A022QLT1\|A0A022QLT1_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU29662.1}
TAIR10	AT2G34630.2	4E-145	geranyl diphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71458838	71468121	+
GWHAAZE00000009	mRNA	71458838	71468121	+
GWHAAZE00000009	exon	71458838	71458963	+
GWHAAZE00000009	exon	71459464	71459535	+
GWHAAZE00000009	exon	71460220	71460354	+
GWHAAZE00000009	exon	71461645	71461731	+
GWHAAZE00000009	exon	71462691	71462762	+
GWHAAZE00000009	exon	71463744	71463829	+
GWHAAZE00000009	exon	71464412	71464544	+
GWHAAZE00000009	exon	71465935	71466024	+
GWHAAZE00000009	exon	71466669	71466767	+
GWHAAZE00000009	exon	71467942	71468121	+
GWHAAZE00000009	CDS	71458838	71458963	+
GWHAAZE00000009	CDS	71459464	71459535	+
GWHAAZE00000009	CDS	71460220	71460354	+
GWHAAZE00000009	CDS	71461645	71461731	+
GWHAAZE00000009	CDS	71462691	71462762	+
GWHAAZE00000009	CDS	71463744	71463829	+
GWHAAZE00000009	CDS	71464412	71464544	+
GWHAAZE00000009	CDS	71465935	71466024	+
GWHAAZE00000009	CDS	71466669	71466767	+
GWHAAZE00000009	CDS	71467942	71468121	+

Transcript Sequence
>GWHTAAZE032182 TTTCTCCACTTTGTTGAGATATCTTATATTTGTATTCCCATTCAGGAGCAAGTGGACCCATTTTCTCTTGTTGCTGATGAATTATCACTTCTTGCTAATAGGTTGCGGTCTATGGTAGTTGCTGAGGTCCCAAAGCTCGCCTCAGCTGCTGAATATTTCTTTAAGATGGGTGTGGAAGGAAAGAGGTTTCGACCGACGGTTCTGTTGTTGATGGCAACAGCTCTAAATGTACCTGTATCTGGACCAAATGCTGATGGGGCCGTTGTTGATATGTTGTCTAGCGAACTACGTACAAGACAGCAGAACATAGCTGAGATCACAGAGATGATCCATGTCGCCAGCCTTCTTCATGATGATGTACTAGATGATGCTGATACAAGACGTGGAATTGGTTCACTAAACTTTGTAATGGGGAATAAGCTAGCAGTATTGGCAGGAGATTTCTTGCTTTCAAGAGCTTGTGTGGCGCTCGCCTCTTTGAAAAACACTGAGGTTGTATCACTTATGGCAAAAGTTGTGGAGCATCTTGTTACAGGGGAGACCATGCAGATGAGTACTACGCGTGAGCAACGTTCTAGCATGGAATACTACTTAGAAAAGACGTACTACAAGACTGCATCATTGATTTCAAACAGCTGCAAGGCAATCGCGGTAATTGCTGGGCAAACAGCAGAAGTTTCAATGCTGGCGTACGAGTATGGCAGAAACCTGGGATTGGCATTCCAATTAATCGACGACGTTCTTGATTTCACAGGAACATCATCGTCCCTAGGAAAGGGATCATTGTCTGACATTCGCCATGGAATCATAACGGCTCCTATATTATTTGCCATCGAAGAATTCCCAGAGTTGCGTGCAGTTGTTGATCGCGGATTTGATAACCCTGCGGATGTGGATCTTGCTCTTGACTACCTGGGAAAGAGTCGAGGCATAGAAAGAACGAGGGAGCTGGCAACGAAGCACGCCAGCCTGGCATCGGCCACGATTGATTCTCTGCCCAAGAATGATGACGAGGATGTTCAAAAATCGAGGCGGGCACTTGTAGAATTAACACAGAGAGTAATTACAAGAACGAAGTAG

Network for GWHGAAZE032144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	45	303	3.50E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14066	GPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.787
	SRR3591706	second leaf	15.503
	SRR3591707	mature leaf	13.703
	SRR3591708	Shoot apex	15.010
	SRR3591709	Stem	33.576
	SRR3591710	White floral bud	17.179
	SRR3591711	White flower	18.612
	SRR3591712	Green floral bud	16.185
	SRR3591713	Yellow flower	19.976
SRP173429	SRR8316895	Juvenile bud stage	14.917
	SRR8316896	Juvenile bud stage	22.598
	SRR8316897	Juvenile bud stage	10.359
	SRR8316894	Third green stage	7.935
	SRR8316900	Third green stage	21.398
	SRR8316901	Third green stage	22.994
	SRR8316898	Complete white stage	10.855
	SRR8316899	Complete white stage	24.680
	SRR8316903	Complete white stage	18.576
	SRR8316902	Silver flowering stage	11.478
	SRR8316904	Silver flowering stage	15.532
	SRR8316905	Silver flowering stage	7.120
	SRR8316906	Gold flowering stage	28.276
	SRR8316907	Gold flowering stage	28.348
	SRR8316908	Gold flowering stage	27.407
SRP132670	SRR6706286	Control	22.711
	SRR6706287	Light intensity 50%	23.046
	SRR6706288	Light intensity 20%	23.417
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.935
	CNS0095593	Slightly white alabastrum(diploid) 2	15.128
	CNS0095594	Slightly white alabastrum(diploid) 3	21.967
	CNS0095595	Whole white alabastrum(diploid) 2	13.074
	CNS0095596	Whole white alabastrum(diploid) 3	15.502
	CNS0095597	Whole white alabastrum(diploid) 4	12.899
	CNS0095598	Silvery flower (diploied) 1	20.969
	CNS0095599	Silvery flower (diploied) 2	17.869
	CNS0095600	Silvery flower (diploied) 3	20.185
	CNS0095601	Golden flower (diploid) 1	24.280
	CNS0095602	Golden flower (diploid) 2	22.214
	CNS0095603	Golden flower (diploid) 3	19.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.657
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.352
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.899
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.291
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.414
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.639
	CNS0095610	Silvery flower (tetraploid) 1	24.933
	CNS0095611	Silvery flower (tetraploid) 2	23.337
	CNS0095612	Silvery flower (tetraploid) 3	22.107
	CNS0095613	Golden flower (tetraploid) 1	16.819
	CNS0095614	Golden flower (tetraploid) 2	19.471
	CNS0095615	Golden flower (tetraploid) 3	21.628
CRA001975	CRR073297	Stem 1	24.622
	CRR073298	Stem 2	18.989
	CRR073299	Stem 3	14.641
	CRR073300	Leaf 1	21.517
	CRR073301	Leaf 2	24.815
	CRR073302	Leaf 3	17.409
	CRR073303	Juvenile bud 1	17.120
	CRR073304	Juvenile bud 2	14.525
	CRR073305	Juvenile bud 3	17.982
	CRR073306	Third green 1	11.650
	CRR073307	Third green 2	8.968
	CRR073308	Third green 3	11.472
	CRR073309	Second white 1	10.779
	CRR073310	Second white 2	12.517
	CRR073311	Second white 3	12.064
	CRR073312	Silver flowering 1	11.255
	CRR073313	Silver flowering 2	11.129
	CRR073314	Silver flowering 3	11.479
	CRR073315	Gold flowering 1	16.336
	CRR073316	Gold flowering 2	24.699
	CRR073317	Gold flowering 3	8.597
	CRR073318	Tawny withering 1	15.339
	CRR073319	Tawny withering 2	16.290
	CRR073320	Tawny withering 3	15.146