Detail information of GWHGAAZE032162


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277519.13.6039E-164PREDICTED: F-box protein SKIP1 [Vitis vinifera]
Swissprottr|Q9FDX1|SKIP1_ARATH7E-123F-box protein SKIP1
trEMBLtr|F6HYK3|F6HYK3_VITVI1E-164Putative uncharacterized protein {ECO:0000313|EMBL:CCB59767.1}
TAIR10AT5G57900.13E-99SKP1 interacting partner 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7185368671856986+
GWHAAZE00000009mRNA7185368671856986+
GWHAAZE00000009exon7185368671854056+
GWHAAZE00000009exon7185641371856986+
GWHAAZE00000009CDS7185368671854056+
GWHAAZE00000009CDS7185641371856986+
Transcript Sequence

Network for GWHGAAZE032162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0005


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.7LRR_62482621.1
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf61.718
SRR3591706second leaf22.252
SRR3591707mature leaf36.310
SRR3591708Shoot apex28.106
SRR3591709Stem80.071
SRR3591710White floral bud62.956
SRR3591711White flower57.706
SRR3591712Green floral bud35.657
SRR3591713Yellow flower63.652
SRP173429 SRR8316895Juvenile bud stage 22.735
SRR8316896Juvenile bud stage 28.546
SRR8316897Juvenile bud stage 15.661
SRR8316894Third green stage 11.695
SRR8316900Third green stage 34.491
SRR8316901Third green stage 33.036
SRR8316898Complete white stage 33.521
SRR8316899Complete white stage 68.519
SRR8316903Complete white stage 42.739
SRR8316902Silver flowering stage27.876
SRR8316904Silver flowering stage34.950
SRR8316905Silver flowering stage18.183
SRR8316906Gold flowering stage 57.028
SRR8316907Gold flowering stage 52.366
SRR8316908Gold flowering stage 50.953
SRP132670SRR6706286Control46.641
SRR6706287Light intensity 50%41.371
SRR6706288Light intensity 20%39.209
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.514
CNS0095593Slightly white alabastrum(diploid) 222.773
CNS0095594Slightly white alabastrum(diploid) 326.129
CNS0095595Whole white alabastrum(diploid) 226.210
CNS0095596Whole white alabastrum(diploid) 323.810
CNS0095597Whole white alabastrum(diploid) 425.821
CNS0095598Silvery flower (diploied) 146.222
CNS0095599Silvery flower (diploied) 250.906
CNS0095600Silvery flower (diploied) 392.150
CNS0095601Golden flower (diploid) 151.627
CNS0095602Golden flower (diploid) 287.334
CNS0095603Golden flower (diploid) 382.639
CNS0095604Slightly white alabastrum(tetraploid) 133.439
CNS0095605Slightly white alabastrum(tetraploid) 229.870
CNS0095606Slightly white alabastrum(tetraploid) 346.618
CNS0095607Whole white alabastrum(tetraploid) 128.548
CNS0095608Whole white alabastrum(tetraploid) 231.781
CNS0095609Whole white alabastrum(tetraploid) 337.969
CNS0095610Silvery flower (tetraploid) 177.185
CNS0095611Silvery flower (tetraploid) 299.147
CNS0095612Silvery flower (tetraploid) 373.166
CNS0095613Golden flower (tetraploid) 158.482
CNS0095614Golden flower (tetraploid) 274.909
CNS0095615Golden flower (tetraploid) 3108.509
CRA001975CRR073297Stem 144.737
CRR073298Stem 243.852
CRR073299Stem 357.378
CRR073300Leaf 147.734
CRR073301Leaf 250.996
CRR073302Leaf 352.635
CRR073303Juvenile bud 164.357
CRR073304Juvenile bud 263.095
CRR073305Juvenile bud 378.186
CRR073306Third green 173.806
CRR073307Third green 278.225
CRR073308Third green 363.916
CRR073309Second white 178.989
CRR073310Second white 254.431
CRR073311Second white 351.152
CRR073312Silver flowering 145.203
CRR073313Silver flowering 264.986
CRR073314Silver flowering 357.038
CRR073315Gold flowering 150.911
CRR073316Gold flowering 247.914
CRR073317Gold flowering 339.832
CRR073318Tawny withering 179.474
CRR073319Tawny withering 261.180
CRR073320Tawny withering 377.502