Detail information of GWHGAAZE032167


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN70546.10hypothetical protein VITISV_013807 [Vitis vinifera]
Swissprottr|Q93ZT6|IF4G1_ARATH0Eukaryotic translation initiation factor isoform 4G-1
trEMBLtr|A5BU43|A5BU43_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN70546.1}
TAIR10AT5G57870.10MIF4G domain-containing protein / MA3 domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7192366271932923-
GWHAAZE00000009mRNA7192366271932923-
GWHAAZE00000009exon7193276271932923-
GWHAAZE00000009exon7193139271931463-
GWHAAZE00000009exon7193066371930794-
GWHAAZE00000009exon7193037171930562-
GWHAAZE00000009exon7192917871929275-
GWHAAZE00000009exon7192757871927665-
GWHAAZE00000009exon7192666371927013-
GWHAAZE00000009exon7192598971926231-
GWHAAZE00000009exon7192366271924627-
GWHAAZE00000009CDS7193276271932923-
GWHAAZE00000009CDS7193139271931463-
GWHAAZE00000009CDS7193066371930794-
GWHAAZE00000009CDS7193037171930562-
GWHAAZE00000009CDS7192917871929275-
GWHAAZE00000009CDS7192757871927665-
GWHAAZE00000009CDS7192666371927013-
GWHAAZE00000009CDS7192598971926231-
GWHAAZE00000009CDS7192366271924627-
Transcript Sequence

Network for GWHGAAZE032167

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02854.20MIF4G2144391.30E-59
PF02847.18MA36217331.20E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03260EIF4G RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf80.559
SRR3591706second leaf61.071
SRR3591707mature leaf62.280
SRR3591708Shoot apex59.563
SRR3591709Stem67.050
SRR3591710White floral bud116.286
SRR3591711White flower110.552
SRR3591712Green floral bud136.321
SRR3591713Yellow flower116.741
SRP173429 SRR8316895Juvenile bud stage 38.107
SRR8316896Juvenile bud stage 60.328
SRR8316897Juvenile bud stage 28.765
SRR8316894Third green stage 25.400
SRR8316900Third green stage 93.319
SRR8316901Third green stage 93.188
SRR8316898Complete white stage 41.297
SRR8316899Complete white stage 118.020
SRR8316903Complete white stage 57.156
SRR8316902Silver flowering stage41.310
SRR8316904Silver flowering stage50.107
SRR8316905Silver flowering stage25.048
SRR8316906Gold flowering stage 100.692
SRR8316907Gold flowering stage 94.228
SRR8316908Gold flowering stage 97.654
SRP132670SRR6706286Control80.260
SRR6706287Light intensity 50%82.907
SRR6706288Light intensity 20%86.576
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.668
CNS0095593Slightly white alabastrum(diploid) 256.350
CNS0095594Slightly white alabastrum(diploid) 350.013
CNS0095595Whole white alabastrum(diploid) 279.828
CNS0095596Whole white alabastrum(diploid) 384.987
CNS0095597Whole white alabastrum(diploid) 489.939
CNS0095598Silvery flower (diploied) 144.256
CNS0095599Silvery flower (diploied) 242.025
CNS0095600Silvery flower (diploied) 395.264
CNS0095601Golden flower (diploid) 136.897
CNS0095602Golden flower (diploid) 299.691
CNS0095603Golden flower (diploid) 395.853
CNS0095604Slightly white alabastrum(tetraploid) 171.886
CNS0095605Slightly white alabastrum(tetraploid) 271.487
CNS0095606Slightly white alabastrum(tetraploid) 386.607
CNS0095607Whole white alabastrum(tetraploid) 188.892
CNS0095608Whole white alabastrum(tetraploid) 283.457
CNS0095609Whole white alabastrum(tetraploid) 397.393
CNS0095610Silvery flower (tetraploid) 190.202
CNS0095611Silvery flower (tetraploid) 280.781
CNS0095612Silvery flower (tetraploid) 397.445
CNS0095613Golden flower (tetraploid) 159.727
CNS0095614Golden flower (tetraploid) 296.552
CNS0095615Golden flower (tetraploid) 3118.505
CRA001975CRR073297Stem 1101.041
CRR073298Stem 294.269
CRR073299Stem 3105.102
CRR073300Leaf 1137.567
CRR073301Leaf 2120.855
CRR073302Leaf 3108.782
CRR073303Juvenile bud 1135.362
CRR073304Juvenile bud 2120.118
CRR073305Juvenile bud 3143.599
CRR073306Third green 1113.238
CRR073307Third green 2102.721
CRR073308Third green 3108.998
CRR073309Second white 1157.152
CRR073310Second white 2149.667
CRR073311Second white 3180.065
CRR073312Silver flowering 1260.247
CRR073313Silver flowering 2274.649
CRR073314Silver flowering 3239.117
CRR073315Gold flowering 166.312
CRR073316Gold flowering 288.198
CRR073317Gold flowering 379.632
CRR073318Tawny withering 1113.155
CRR073319Tawny withering 288.015
CRR073320Tawny withering 3114.553