Gene detail

Detail information of GWHGAAZE032169

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGJ71354.1	0	cellulose synthase 3 [Eucalyptus urophylla]
COG	YP_007129238.1	6E-18	glycosyl transferase family 2
Swissprot	tr\|Q9SWW6\|CESA7_ARATH	0	Cellulose synthase A catalytic subunit 7 [UDP-forming]
trEMBL	tr\|S4UIF5\|S4UIF5_EUCUR	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}
TAIR10	AT5G17420.1	0	Cellulose synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71960730	71966925	+
GWHAAZE00000009	mRNA	71960730	71966925	+
GWHAAZE00000009	exon	71960730	71960804	+
GWHAAZE00000009	exon	71960926	71961121	+
GWHAAZE00000009	exon	71961398	71961543	+
GWHAAZE00000009	exon	71961835	71961937	+
GWHAAZE00000009	exon	71962296	71962419	+
GWHAAZE00000009	exon	71963005	71963271	+
GWHAAZE00000009	exon	71963698	71964043	+
GWHAAZE00000009	exon	71964186	71964449	+
GWHAAZE00000009	exon	71964602	71964814	+
GWHAAZE00000009	exon	71965021	71965228	+
GWHAAZE00000009	exon	71965321	71965517	+
GWHAAZE00000009	exon	71965856	71966209	+
GWHAAZE00000009	exon	71966344	71966925	+
GWHAAZE00000009	CDS	71960730	71960804	+
GWHAAZE00000009	CDS	71960926	71961121	+
GWHAAZE00000009	CDS	71961398	71961543	+
GWHAAZE00000009	CDS	71961835	71961937	+
GWHAAZE00000009	CDS	71962296	71962419	+
GWHAAZE00000009	CDS	71963005	71963271	+
GWHAAZE00000009	CDS	71963698	71964043	+
GWHAAZE00000009	CDS	71964186	71964449	+
GWHAAZE00000009	CDS	71964602	71964814	+
GWHAAZE00000009	CDS	71965021	71965228	+
GWHAAZE00000009	CDS	71965321	71965517	+
GWHAAZE00000009	CDS	71965856	71966209	+
GWHAAZE00000009	CDS	71966344	71966925	+

Transcript Sequence
>GWHTAAZE032207 ATGGAAGCCAACGCCGGACTTGTCGCCGGATCTCACAACCGGAATGAACTTGTCGTCATTCATGGCCATGAAGAGCATAAGCCATTGAAGGATCTAAATGGTCAAGTTTGTGAGATATGTGGCGACGAGATCGGCCTGACTGTCGATGGGGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGTTTGCCGGCCCTGCTATGAGTACGAGAGGAGAGAGGGTAGCCAGCTGTGCCCACAGTGCAGGACTAGATACAAGCGTCTCAAAGATGAATTCAAAATTGATGATGATCAAAACAAGAACAAAAACATCGTGGAAGCCATGCTTCAGGGAAAGATGAGCTATGGAAGAGGACCCGAGGACGACGATAATGCCCAATACCCACCTGTCATTGCGGGTGTTCGCTCTCGCCACGTGAGCGGTGAGTTCCCAATATCAGGCAATGCTCATGGAGACCAACAGATCTTGTCTTCTGCTCTGCACAAACGTGTTCATCCTTACCCTGTCTCTGAGCCAGGAAGTGCGAGATGGGATGAAAAGAAAGAGGGAGGAGGATGGAAAGAAAGGATGGATGACTGGAAGTTGCAGCAAGGCAATCTCGGCCCGGAAGGTGATGACTCTGCCGATGTCGACATGGCCATGGTGGATGAAGCAAGGCAGCCATTATCAAGAAAAGTACCGATAGCATCGAGCAAGATCAACCCATATAGGATGGTGATTGTAACCCGTCTTGTGGTTTTGGCTATCTTCCTCCGGTATAGGATCTTGAACCCAGTGCACGATGCACTCGGGCTCTGGCTAACCTCTGTGATCTGTGAGATCTGGTTCGCCTTCTCTTGGATCCTTGATCAGTTCCCCAAGTGGTTCCCTATCGACCGTGAGACTTATCTTGACCGCCTCTCTTTCAGGTACGAGAGAGAAGGTGAACCTAATATGCTATGTCCAGTAGATATCTTTGTCAGTTCAGTGGATCCCATGAAGGAGCCTCCTCTTATTACGGCTAACACAGTGCTATCAATCTTAGCAATGGACTACCCGGTTGAAAAAATCTCGTGCTATATATCTGATGATGGAGCTTCAATGCTTACCTTTGAGTCTCTATCAGAAACTGCAGAATTTGCTCGCAAATGGGTCCCTTTCTGCAAGAAATTTTCAATAGAGCCTCGAGCCCCGGAGATGTACTTCTCTCTCAAAGTGGATTACCTGAAAGACAAAGTGCAGCCAACTTTTGTCAAGGAACGCCGTGCTATGAAGAGAGAATATGAAGAATTCAAGGTTAGAATCAATGCACTAGTCGCAAAAGCCATGAAAGTACCTGCAGAAGGTTGGATCATGCAAGACGGAACACCATGGCCGGGGAACAATACCAAGGATCATCCGGGTATGATTCAAGTCTTTTTAGGGCAAAGCGGAGGCCTTGATGCTGAAGGAAATGAGCTTCCTCGTCTGGTTTATGTTTCTCGAGAGAAAAGGCCCGGTTTCCAACATCACAAGAAAGCCGGTGCAATGAATGCCTTGGTTCGAGTATCGGGTGTTCTTACTAATGCCCCCTTCATGTTGAACTTGGATTGTGATCATTACCTAAATAATAGCAAGGCTGTGCGAGAGGCAATGTGTTTCTTGATGGACCCACAAATTGGGAGAAAGGTTTGCTATGTCCAATTCCCTCAAAGATTTGATGGCATAGACAGGAACGATCGATATGCCAACCGAAACACAGTCTTCTTCGATATTAACATGAAGGGTCTAGATGGAATTCAAGGTCCTGTATATGTGGGCACAGGGTGTGTCTTTAGAAGACAAGCTTTATATGGCTATGAACCTCCAAAGGGTCCAAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCTTTGGACGCCGCAAGAAGCTTCAGAAATATTCTCTGCATGGTGCTAATGGAGAAAGTGCAAACACTCAAGGATTTGATGATGACAAGGAGTTGCTGAAGTCCCAAATGAATTTTGAAAAGAAGTTTGGACAGTCGGCTATTTTTGTGACTTCAACATTGATGGATGAGGGTGGAGTTCCGCCTTCTTCAAGCCCGGCAGCGTTGCTGAAAGAAGCCATTCATGTGATCAGCTGTGGCTATGAAGACAAAACAGAATGGGGCTTAGAGTTGGGTTGGATTTACGGCTCTATTACAGAGGATATCCTAACGGGTTTCAAGATGCATTGCCGGGGTTGGAGGTCCATATACTGTATGCCAAAAAGGCCAGCATTTAAGGGGTCTGCCCCTATCAACCTGTCAGATAGGCTGAATCAGGTGCTCCGTTGGGCTCTTGGGTCTGTTGAGATCTTTTTCAGTCGTCATAGCCCCGTTTGGTATGGTTACAAGGGAGGAAAACTTAAGTGGCTCGAGCGTTTTGCCTATGTCAACACTACTGTTTATCCCTTCACCTCTCTACCTCTCCTTGCTTACTGTACCCTACCGGCTATCTGCTTGCTCACCGGGAAATTCATTATGCCTGAGATAAGCACCTTTGCGAGTTTGTTCTTCATCGCGCTGTTTCTCTCGATCTTCGCAACGGGTATTCTTGAGCTTCGGTGGAGCGGAGTGAGCATTGAAGAATGGTGGAGAAACGAGCAATTTTGGGTCATCGGTGGTGTCTCCGCCCATCTCTTCGCCGTTATACAAGGTCTTCTCAAGATTTTGGCCGGAATCGACACCAACTTTACGGTCACATCAAAGCAATCTGATGATGAAGATTTTGGGGAACTTTATGCCTTTAAATGGACTACCCTACTTATTCCACCAACGACCATCTTAGTGATCAATCTTGTTGGGGTGGTGGCCGGTATCTCCGATGCCATAAACAACGGGTCCGATTCGTGGGGCCCACTTTTCGGGAAGCTCTTCTTTGCATTTTGGGTGATCGTTCATCTCTACCCGTTCCTTAAAGGTCTAATGGGAAAGCAAAACAGAACTCCTACTATTGTGGTAATTTGGTCTGTGCTTTTGGCTTCAATCTTCTCGTTGCTTTGGGTTCGAATCGATCCGTTTGTGATGAAAACTAAGGGGCCTGGTGTTAAGCAATGCGGAATCAATTGCTGA

Network for GWHGAAZE032169

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.7	zf-UDP	27	102	2.60E-35
PF03552.15	Cellulose_synt	317	1016	0

Protein Sequence

>GWHPAAZE032189
MEANAGLVAGSHNRNELVVIHGHEEHKPLKDLNGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCRTRYKRLKDEFKIDDDQNKNKNIVEAMLQGKMSYGRGPEDDDNAQYPPVIAGVRSRHVSGEFPISGNAHGDQQILSSALHKRVHPYPVSEPGSARWDEKKEGGGWKERMDDWKLQQGNLGPEGDDSADVDMAMVDEARQPLSRKVPIASSKINPYRMVIVTRLVVLAIFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLCPVDIFVSSVDPMKEPPLITANTVLSILAMDYPVEKISCYISDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAMKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGQSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYLNNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCFGRRKKLQKYSLHGANGESANTQGFDDDKELLKSQMNFEKKFGQSAIFVTSTLMDEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGKLKWLERFAYVNTTVYPFTSLPLLAYCTLPAICLLTGKFIMPEISTFASLFFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKILAGIDTNFTVTSKQSDDEDFGELYAFKWTTLLIPPTTILVINLVGVVAGISDAINNGSDSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPGVKQCGINC

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030244	biological_process	cellulose biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016760	molecular_function	cellulose synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	170.200
	SRR3591706	second leaf	24.071
	SRR3591707	mature leaf	2.211
	SRR3591708	Shoot apex	12.469
	SRR3591709	Stem	762.777
	SRR3591710	White floral bud	4.178
	SRR3591711	White flower	1.726
	SRR3591712	Green floral bud	11.651
	SRR3591713	Yellow flower	0.080
SRP173429	SRR8316895	Juvenile bud stage	63.637
	SRR8316896	Juvenile bud stage	41.450
	SRR8316897	Juvenile bud stage	11.141
	SRR8316894	Third green stage	7.161
	SRR8316900	Third green stage	15.897
	SRR8316901	Third green stage	19.283
	SRR8316898	Complete white stage	2.870
	SRR8316899	Complete white stage	4.988
	SRR8316903	Complete white stage	2.580
	SRR8316902	Silver flowering stage	0.443
	SRR8316904	Silver flowering stage	0.423
	SRR8316905	Silver flowering stage	0.132
	SRR8316906	Gold flowering stage	0.167
	SRR8316907	Gold flowering stage	0.123
	SRR8316908	Gold flowering stage	0.072
SRP132670	SRR6706286	Control	10.323
	SRR6706287	Light intensity 50%	9.819
	SRR6706288	Light intensity 20%	9.389
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.308
	CNS0095593	Slightly white alabastrum(diploid) 2	8.047
	CNS0095594	Slightly white alabastrum(diploid) 3	16.012
	CNS0095595	Whole white alabastrum(diploid) 2	6.004
	CNS0095596	Whole white alabastrum(diploid) 3	9.470
	CNS0095597	Whole white alabastrum(diploid) 4	5.812
	CNS0095598	Silvery flower (diploied) 1	0.821
	CNS0095599	Silvery flower (diploied) 2	0.744
	CNS0095600	Silvery flower (diploied) 3	1.734
	CNS0095601	Golden flower (diploid) 1	0.681
	CNS0095602	Golden flower (diploid) 2	0.927
	CNS0095603	Golden flower (diploid) 3	1.010
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.964
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.151
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.438
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.309
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.531
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.406
	CNS0095610	Silvery flower (tetraploid) 1	0.496
	CNS0095611	Silvery flower (tetraploid) 2	0.644
	CNS0095612	Silvery flower (tetraploid) 3	0.504
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.364
CRA001975	CRR073297	Stem 1	140.943
	CRR073298	Stem 2	64.251
	CRR073299	Stem 3	71.784
	CRR073300	Leaf 1	12.499
	CRR073301	Leaf 2	10.866
	CRR073302	Leaf 3	18.463
	CRR073303	Juvenile bud 1	1.818
	CRR073304	Juvenile bud 2	1.654
	CRR073305	Juvenile bud 3	3.137
	CRR073306	Third green 1	0.545
	CRR073307	Third green 2	2.234
	CRR073308	Third green 3	1.288
	CRR073309	Second white 1	0.115
	CRR073310	Second white 2	0.100
	CRR073311	Second white 3	0.088
	CRR073312	Silver flowering 1	0.282
	CRR073313	Silver flowering 2	0.367
	CRR073314	Silver flowering 3	0.138
	CRR073315	Gold flowering 1	1.382
	CRR073316	Gold flowering 2	0.426
	CRR073317	Gold flowering 3	1.482
	CRR073318	Tawny withering 1	119.778
	CRR073319	Tawny withering 2	70.804
	CRR073320	Tawny withering 3	211.414