Detail information of GWHGAAZE032177


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18886.11.37475E-63unnamed protein product [Coffea canephora]
trEMBLtr|A0A068VDR4|A0A068VDR4_COFCA5E-64Coffea canephora DH200=94 genomic scaffold, scaffold_299 {ECO:0000313|EMBL:CDP18886.1}
TAIR10AT4G30820.38E-25cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7212253372126695-
GWHAAZE00000009mRNA7212253372126695-
GWHAAZE00000009exon7212253372122891-
GWHAAZE00000009exon7212595572126020-
GWHAAZE00000009exon7212614972126252-
GWHAAZE00000009exon7212669272126695-
GWHAAZE00000009CDS7212669272126695-
GWHAAZE00000009CDS7212614972126252-
GWHAAZE00000009CDS7212595572126020-
GWHAAZE00000009CDS7212262872122891-
GWHAAZE00000009three_prime_UTR7212253372122627-
Transcript Sequence

Network for GWHGAAZE032177

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06391.14MAT12571.30E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10842MNAT1 Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.259
SRR3591706second leaf9.621
SRR3591707mature leaf6.526
SRR3591708Shoot apex15.602
SRR3591709Stem11.479
SRR3591710White floral bud13.439
SRR3591711White flower17.785
SRR3591712Green floral bud21.252
SRR3591713Yellow flower11.980
SRP173429 SRR8316895Juvenile bud stage 10.825
SRR8316896Juvenile bud stage 17.102
SRR8316897Juvenile bud stage 8.065
SRR8316894Third green stage 5.984
SRR8316900Third green stage 20.153
SRR8316901Third green stage 19.540
SRR8316898Complete white stage 7.082
SRR8316899Complete white stage 18.316
SRR8316903Complete white stage 9.022
SRR8316902Silver flowering stage6.988
SRR8316904Silver flowering stage8.542
SRR8316905Silver flowering stage4.509
SRR8316906Gold flowering stage 13.439
SRR8316907Gold flowering stage 11.265
SRR8316908Gold flowering stage 15.096
SRP132670SRR6706286Control17.635
SRR6706287Light intensity 50%19.535
SRR6706288Light intensity 20%22.605
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.156
CNS0095593Slightly white alabastrum(diploid) 222.426
CNS0095594Slightly white alabastrum(diploid) 315.550
CNS0095595Whole white alabastrum(diploid) 213.110
CNS0095596Whole white alabastrum(diploid) 317.827
CNS0095597Whole white alabastrum(diploid) 411.103
CNS0095598Silvery flower (diploied) 120.171
CNS0095599Silvery flower (diploied) 220.236
CNS0095600Silvery flower (diploied) 314.223
CNS0095601Golden flower (diploid) 111.297
CNS0095602Golden flower (diploid) 210.409
CNS0095603Golden flower (diploid) 39.539
CNS0095604Slightly white alabastrum(tetraploid) 121.837
CNS0095605Slightly white alabastrum(tetraploid) 214.772
CNS0095606Slightly white alabastrum(tetraploid) 323.445
CNS0095607Whole white alabastrum(tetraploid) 111.227
CNS0095608Whole white alabastrum(tetraploid) 210.294
CNS0095609Whole white alabastrum(tetraploid) 313.648
CNS0095610Silvery flower (tetraploid) 118.468
CNS0095611Silvery flower (tetraploid) 211.798
CNS0095612Silvery flower (tetraploid) 39.476
CNS0095613Golden flower (tetraploid) 18.721
CNS0095614Golden flower (tetraploid) 214.331
CNS0095615Golden flower (tetraploid) 33.706
CRA001975CRR073297Stem 113.621
CRR073298Stem 213.878
CRR073299Stem 37.676
CRR073300Leaf 114.821
CRR073301Leaf 217.636
CRR073302Leaf 313.343
CRR073303Juvenile bud 114.117
CRR073304Juvenile bud 29.122
CRR073305Juvenile bud 310.093
CRR073306Third green 11.986
CRR073307Third green 21.760
CRR073308Third green 32.593
CRR073309Second white 12.738
CRR073310Second white 23.254
CRR073311Second white 33.305
CRR073312Silver flowering 10.684
CRR073313Silver flowering 21.275
CRR073314Silver flowering 32.495
CRR073315Gold flowering 12.473
CRR073316Gold flowering 25.851
CRR073317Gold flowering 31.883
CRR073318Tawny withering 114.340
CRR073319Tawny withering 210.520
CRR073320Tawny withering 311.178