Gene detail

Detail information of GWHGAAZE032180

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011069581.1	PREDICTED: uncharacterized protein LOC105155405 [Sesamum indicum]
trEMBL	tr\|A0A068U3G2\|A0A068U3G2_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP02852.1}
TAIR10	AT4G30790.1	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72163111	72172086	+
GWHAAZE00000009	mRNA	72163111	72172086	+
GWHAAZE00000009	exon	72163111	72163902	+
GWHAAZE00000009	exon	72165799	72165815	+
GWHAAZE00000009	exon	72166604	72168257	+
GWHAAZE00000009	exon	72168835	72169052	+
GWHAAZE00000009	exon	72170408	72170621	+
GWHAAZE00000009	exon	72171371	72172086	+
GWHAAZE00000009	CDS	72163111	72163902	+
GWHAAZE00000009	CDS	72165799	72165815	+
GWHAAZE00000009	CDS	72166604	72168257	+
GWHAAZE00000009	CDS	72168835	72169052	+
GWHAAZE00000009	CDS	72170408	72170621	+
GWHAAZE00000009	CDS	72171371	72171778	+
GWHAAZE00000009	three_prime_UTR	72171779	72172086	+

Transcript Sequence
>GWHTAAZE032218 ATGAGTTCAGGTCTTTCAGGTGGTGGTGTAGTTCAAAGGGGTAAGCTTTTAGTTCATATTGCTGAGAATGGGCACTCATTTGAGCTCCAGTGTGATGAATACACCATTGTTGAGGAGGTACAGAGATTCTTGGAATCAGCTTCTGGGATTCCGTTCAGTGATCAACTTCTTTTGTGCTTGGACATGAAATTAGAGCCCCAAAGGTCTCTTTCTGCTTACAAGCTCCCCTCTGATGAGAGAGAGGTGTACTTGTTCAACAAGGGTAGAATGCGAATTAATTCGCCAGCTCCACCACCTGAATCGGTTGAAATAATTGAAATTGCAGACCCACAACCTCAATCATCGACCCGCAACCCTCACTGTCTGGATGATGCTTCGGACCCAGCTTTGAAGGCCCTGCCTTCATACGAGAGGCAATTTCGGTACCATTACCATCGTGGGCTTGCAGTTTACAATAGGACCCAAGTGAAATACGAGGCTTGTGAGAAGCTCTTCAGAGAGCAGAAGGTGCAAGAGAAAGCATTGGAGATTGCTAGGGGTATTTTGGATAATTTCTATAAGATGATCCTCCAACTTTACATGGATTTTATGAAGCATTATACAATACAGCACCGGACCCATTCCAATCTTCTTATGAATTTTGAGAGGGATTTGGAGAAACTGAGATCTTGCAAACTTATTCCTTCTTTACAGACTGGTAATCGAAAGTGTTTGCTGGATTTTGTGAAAGATGAGAACTTGCGCAAAATGGTGGAGGATTGTAGCAGCTCTCACAGGCAGTTTGAGAATAAGTTTCATAAGGCTCCTTGCAAAGATGTTGGAATGGTGAAGAAACTTGTGGATGACTGTTTAGCCAGCCAATTATCCTCTTCGCTTCGTCCTCACGATGCAGTTTCAGCTCTGGGCCCCATGTACGAAGGGCATGAAAAACGTTACCTTCCAAAGATGCATGATTGTGAACGAGCAATTACCAACCTCCTCAATTTCTGCAAGGGCAAAAAAGATGAAATGAATACGTTTGTGCACACTTACATGCAAAAGATAGCTGATATTCAGTACACTATAAAAGATGTACGTTTCAAATTCTCAGTTTTCACCGAGGCATTAAAACGTCAGAGCGAACAATTTGAGCACTTGAAGGTGGTCCGTGGTATCGGGCCCGCATACCGAGCTTGCCTTGCAGAGGTAGTGAGAAGAAAGGCTTTGATGAAACTTTATATGGGTATGGCTGGTCAATTAGCCGAACGGCTCGCAACAAAGAGGGACGTTGAAGTGAGAAGAAGAGAGGAGTTTCTAAAAAAACATAGTTCGTACATCCCAAGGGATATCTTGGCATTAATGGGATTATACGATACTCCTAGTCCGTGTAATGTCAATATAGCTCCTTTCGACCTTAATTTACTCGATATTGATATTTCACATATAGAACGTTATGCTCCTGAGTATTTAGTAGGACTCTATTCTAGGAGTGAGAAGCATGGATCTTCGAGGGGTTCGTTTTCCAATGATAGTTCTCACTCAACTGGGGTCGAAGAAATTTCTGTGAATGTTGATGAGCAATACGATTTTGAGGAGATCCTTGAAGCGTCTGAGTTGGTAGAGATTGCTGGAACAAGCAAAATGGAAGTTGAAAATGCGAAGCTAAAAGCCGATCTCGCTTCAGCAATAGCTATGCTTTGTTCTTTCTGTCCCGATATTGAATATGAATCGCTCGATGACAGTAAAATGGAGAGTTTACTGAAAGATACTAAAGAGAAAACCGCTGAAGCCTTGCATTTGAAAGATGAATATGGAAAACATTTGCAGTCTATGCTAAAGACAAAGCAATTGCAGTGCGAGTCCTATGAGAAACGTATTCAAGAACTGGAGCAGAGGTTGTCTGATCGTTATTCGCAAGAGCATAATGTTTCAGATAACAAGGAAGCATCAATCTTTGAGCTTTCAAGTGGGAAGGCTCATGACAGCAAATCGGAAATATGTGGGACCCACATACCGTATGTATCAACTGAATCCATGGACGATGTTTCTAGTGCGTCTAATTCGTTATATGTGAAATCGGGTGTTCTTGACAAACAAGGGAAAGCACGGGAACCGTTGGATGAGAATATGGCGGATTCCTCTTCGGGAATGTTGAATCCTCATTTAGATTCATCTATGGTAGAACCAAGCCGCGATGAAGTGCAGGCTGATGATAAAGATGAGAAAGATACGGTGCTGGCTGATGTGGGTCCACTGGAAACCAGTTCCACTGCTGATCCTGTAAATACTTTACCTTCTGACAGAGCGGTTGACCCAGGATTGGATTCTAATGTTAGTGTTGATATGGTGGAATTGCGAAATGTAATTACAGAAAAATCGAATCAGTTGAACGAAACGGAATCCAAGATTGCAGCATTGATGGAGGAAGTTGCAAATCTTGGGAAGGAGTTGGAAATTAGCCAGAAGCTCCTAGATGAATCTCAGATGAATTGTGCTCACTTGGAAAATTGTCTCCATGAAGCAAGAGAAGAAGCTCAGACTCATCTTTGTGCAGCGAATCGGCGGGCGGCAGAGTATAGTGCAATACGTGCTTCTGCCATAAAAATGCGAGGCCTTTTTGAAAGATTAAGGAGCTGTGTTTCTTCAAGTGGGGTAGCTGCTTTCGCAGAGTCGTTGCGTGTTTTAGCTCAATCTTTGTCCAATTCGACTAGTGACAATGAAGATGATGGTATTGCTGAGTTCCGTGAATGTATCCGGGGACTGGCTGATAAAGTCAGTATCCTGTCGAGGCACCGTGCAGAGCTGCTCGAAAGGTACTCTAAGGCTGAAGCTGCAAACTCCCAACTTGCAAAGGAATTGGAAGACAAAAAGGAGTTGGTCAACACTCTCTACCTTAAGCATCAACATGAGAAGCAGGCAAACAAGGAGAAAATATCCTTTGGCCGATTAGTAGTCCACGAGATTGCTGCATTCGTCCTCAACTCCTCCTCTGGACACTACGAGGCGATCAATCGCAACTGCCCTCACTACTACCTCTCTGCTGAATCTGTGGCCCTTTTTGCTGACAACCCATCGCACAGCCCTAGGTACATCATCGGACAAATTGTGCACATTGAAAGGCGATCTGCAGCCCCCCCTTCCCCTACCAGTAGGTCTGACCTCGTAGAATTCCCGACCCCCTCTGATGCGGCTACCAGTCAGTTGAGCTCAAATTCTGGGTCAACTTTGAACCTGTATGGGGTCCCAGTCGGGTGTGAATATTTCGTAGTGACAATAGCCATGTTACCGGATACCACCACCGTTCATTCGCAATCTCCTTCCTGATCTGGCGACAAAGGGGAGCTTTTGATATGGATATGATGGAAGAAAACCCAAATGTAAATACATAATTGTGTTAATTTCGAAAGGTGAAAATGGTGGTGGTGCTGGGAGTTTACAGTTGCTTTCCTCCTCCTTGTACAGGTGATGATTACGAGGAGGAAGGACACTTCTACTAATTCAATTAAAACTCCCCCTTTGTATATAATTTTCTCTCTAGATCTCCCTCTCTGTAGAAACTCTCAGAATGTTTATTGTCTGCATTTCGACTTGGTTCAGATAATACAGTACATATTTTCTCTGTTTTTGTTATA

Network for GWHGAAZE032180

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04108.13	APG17	320	445	5.10E-07
PF10377.10	ATG11	930	1086	8.90E-17

Protein Sequence

>GWHPAAZE032200
MSSGLSGGGVVQRGKLLVHIAENGHSFELQCDEYTIVEEVQRFLESASGIPFSDQLLLCLDMKLEPQRSLSAYKLPSDEREVYLFNKGRMRINSPAPPPESVEIIEIADPQPQSSTRNPHCLDDASDPALKALPSYERQFRYHYHRGLAVYNRTQVKYEACEKLFREQKVQEKALEIARGILDNFYKMILQLYMDFMKHYTIQHRTHSNLLMNFERDLEKLRSCKLIPSLQTGNRKCLLDFVKDENLRKMVEDCSSSHRQFENKFHKAPCKDVGMVKKLVDDCLASQLSSSLRPHDAVSALGPMYEGHEKRYLPKMHDCERAITNLLNFCKGKKDEMNTFVHTYMQKIADIQYTIKDVRFKFSVFTEALKRQSEQFEHLKVVRGIGPAYRACLAEVVRRKALMKLYMGMAGQLAERLATKRDVEVRRREEFLKKHSSYIPRDILALMGLYDTPSPCNVNIAPFDLNLLDIDISHIERYAPEYLVGLYSRSEKHGSSRGSFSNDSSHSTGVEEISVNVDEQYDFEEILEASELVEIAGTSKMEVENAKLKADLASAIAMLCSFCPDIEYESLDDSKMESLLKDTKEKTAEALHLKDEYGKHLQSMLKTKQLQCESYEKRIQELEQRLSDRYSQEHNVSDNKEASIFELSSGKAHDSKSEICGTHIPYVSTESMDDVSSASNSLYVKSGVLDKQGKAREPLDENMADSSSGMLNPHLDSSMVEPSRDEVQADDKDEKDTVLADVGPLETSSTADPVNTLPSDRAVDPGLDSNVSVDMVELRNVITEKSNQLNETESKIAALMEEVANLGKELEISQKLLDESQMNCAHLENCLHEAREEAQTHLCAANRRAAEYSAIRASAIKMRGLFERLRSCVSSSGVAAFAESLRVLAQSLSNSTSDNEDDGIAEFRECIRGLADKVSILSRHRAELLERYSKAEAANSQLAKELEDKKELVNTLYLKHQHEKQANKEKISFGRLVVHEIAAFVLNSSSGHYEAINRNCPHYYLSAESVALFADNPSHSPRYIIGQIVHIERRSAAPPSPTSRSDLVEFPTPSDAATSQLSSNSGSTLNLYGVPVGCEYFVVTIAMLPDTTTVHSQSPS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08330	ATG11	Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.849
	SRR3591706	second leaf	8.788
	SRR3591707	mature leaf	12.920
	SRR3591708	Shoot apex	12.569
	SRR3591709	Stem	17.687
	SRR3591710	White floral bud	12.484
	SRR3591711	White flower	19.650
	SRR3591712	Green floral bud	10.581
	SRR3591713	Yellow flower	13.045
SRP173429	SRR8316895	Juvenile bud stage	6.689
	SRR8316896	Juvenile bud stage	8.954
	SRR8316897	Juvenile bud stage	3.512
	SRR8316894	Third green stage	3.463
	SRR8316900	Third green stage	5.379
	SRR8316901	Third green stage	5.140
	SRR8316898	Complete white stage	2.364
	SRR8316899	Complete white stage	9.360
	SRR8316903	Complete white stage	4.627
	SRR8316902	Silver flowering stage	6.344
	SRR8316904	Silver flowering stage	8.084
	SRR8316905	Silver flowering stage	3.564
	SRR8316906	Gold flowering stage	14.317
	SRR8316907	Gold flowering stage	14.326
	SRR8316908	Gold flowering stage	15.920
SRP132670	SRR6706286	Control	5.423
	SRR6706287	Light intensity 50%	5.755
	SRR6706288	Light intensity 20%	5.569
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.186
	CNS0095593	Slightly white alabastrum(diploid) 2	5.785
	CNS0095594	Slightly white alabastrum(diploid) 3	6.627
	CNS0095595	Whole white alabastrum(diploid) 2	4.004
	CNS0095596	Whole white alabastrum(diploid) 3	3.760
	CNS0095597	Whole white alabastrum(diploid) 4	4.753
	CNS0095598	Silvery flower (diploied) 1	8.758
	CNS0095599	Silvery flower (diploied) 2	6.804
	CNS0095600	Silvery flower (diploied) 3	13.636
	CNS0095601	Golden flower (diploid) 1	9.426
	CNS0095602	Golden flower (diploid) 2	15.470
	CNS0095603	Golden flower (diploid) 3	15.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.414
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.569
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.560
	CNS0095610	Silvery flower (tetraploid) 1	13.547
	CNS0095611	Silvery flower (tetraploid) 2	15.237
	CNS0095612	Silvery flower (tetraploid) 3	14.037
	CNS0095613	Golden flower (tetraploid) 1	9.474
	CNS0095614	Golden flower (tetraploid) 2	11.013
	CNS0095615	Golden flower (tetraploid) 3	19.792
CRA001975	CRR073297	Stem 1	12.739
	CRR073298	Stem 2	13.168
	CRR073299	Stem 3	11.485
	CRR073300	Leaf 1	10.520
	CRR073301	Leaf 2	10.307
	CRR073302	Leaf 3	7.105
	CRR073303	Juvenile bud 1	8.470
	CRR073304	Juvenile bud 2	5.967
	CRR073305	Juvenile bud 3	9.883
	CRR073306	Third green 1	9.753
	CRR073307	Third green 2	6.272
	CRR073308	Third green 3	10.075
	CRR073309	Second white 1	15.716
	CRR073310	Second white 2	16.670
	CRR073311	Second white 3	16.952
	CRR073312	Silver flowering 1	13.597
	CRR073313	Silver flowering 2	12.445
	CRR073314	Silver flowering 3	9.896
	CRR073315	Gold flowering 1	9.403
	CRR073316	Gold flowering 2	13.346
	CRR073317	Gold flowering 3	11.071
	CRR073318	Tawny withering 1	10.377
	CRR073319	Tawny withering 2	7.734
	CRR073320	Tawny withering 3	8.415