Gene detail

Detail information of GWHGAAZE032188

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009618355.1	1.7044E-109	PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X1 [Nicotiana tomentosiformis]
COG	YP_001154790.1	7E-14	nuclear protein SET
Swissprot	tr\|Q949T8\|ASHR3_ARATH	3E-93	Histone-lysine N-methyltransferase ASHR3
trEMBL	tr\|D7U1H1\|D7U1H1_VITVI	7E-105	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36587.3}
TAIR10	AT4G30860.1	5E-80	SET domain group 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72316660	72337305	+
GWHAAZE00000009	mRNA	72316660	72337305	+
GWHAAZE00000009	exon	72316660	72317088	+
GWHAAZE00000009	exon	72318900	72318944	+
GWHAAZE00000009	exon	72320310	72320480	+
GWHAAZE00000009	exon	72323622	72323648	+
GWHAAZE00000009	exon	72324525	72324642	+
GWHAAZE00000009	exon	72325226	72325361	+
GWHAAZE00000009	exon	72325472	72325565	+
GWHAAZE00000009	exon	72325697	72325775	+
GWHAAZE00000009	exon	72329685	72329897	+
GWHAAZE00000009	exon	72330195	72330369	+
GWHAAZE00000009	exon	72330429	72330714	+
GWHAAZE00000009	exon	72335020	72335234	+
GWHAAZE00000009	exon	72336037	72336141	+
GWHAAZE00000009	exon	72337041	72337305	+
GWHAAZE00000009	five_prime_UTR	72316660	72316773	+
GWHAAZE00000009	CDS	72316774	72317088	+
GWHAAZE00000009	CDS	72318900	72318944	+
GWHAAZE00000009	CDS	72320310	72320480	+
GWHAAZE00000009	CDS	72323622	72323648	+
GWHAAZE00000009	CDS	72324525	72324642	+
GWHAAZE00000009	CDS	72325226	72325361	+
GWHAAZE00000009	CDS	72325472	72325565	+
GWHAAZE00000009	CDS	72325697	72325775	+
GWHAAZE00000009	CDS	72329685	72329897	+
GWHAAZE00000009	CDS	72330195	72330369	+
GWHAAZE00000009	CDS	72330429	72330714	+
GWHAAZE00000009	CDS	72335020	72335234	+
GWHAAZE00000009	CDS	72336037	72336141	+
GWHAAZE00000009	CDS	72337041	72337197	+
GWHAAZE00000009	three_prime_UTR	72337198	72337305	+

Transcript Sequence
>GWHTAAZE032226 GCCTATACACGCGGCGCATATCAGTTTTTGTTTGAATGTACTTTTCAACCTCAAAGTTGCCGCAACTCCCTTGGTCCTAAAAGACTTTCTAATTTCTAGGGTTTCGAATCAACAATGCCTGATCTAGGCAATCTGTTGAATTCGTCTACTCTTACCCTAACTCGTTGCGCCGATCTCAAATCGGCCGATGAAGAATGCCCTACTCCTGGCGAAACACTCGAAACTGTATTGAGAGATGAAACTCTAGTGATGAATGAAGGGGAAGTGAGGGATCGTAATGGGAATTTGAGGAGGTGTAGAGGGTCAAATAAGTTAGCGGGAGGTAAGAACTTGGATGATTTTGTGAAGGATTGGGTTGCTAAGAAGATGGAATTGGGAGTTTCTGAAGAGAAGTGCTTCTTACCATTTCTTGTTGGAGCTCCTAAATTGGCTGACTGTCGTGCTTGTCAAAAAGTTATCTACCCTGGATCAGAGGCATGCTTCCTATGCAAACAGAAGTTCAATTTATGGAAATGTGTGAGATGTGAATTGGCATCACATGAGAAGTGCACACCGTTTCCAGAGTACGTGGTCCAGCTTCATAACCGACCAGGGCAAGCCATTTGTTGGAGACATCCTGCTGATTGGCATATGGAGAAGAAGAAGCGTGCAGTTCCAGCAAGTGACATAGAGGAAATATTCCATTGCTTGCCAGTACCATATGTTGAGGAAGAGTTCAAGATTGATCCTTCTTGGAAAGACATTGTAGAGAATAAATTGGAGCCAACTGCATATAAGCACATTAGGCGCATGACAGTTATTAGTGTTCTTACCTTAATTGGTTTAGATATCTACCTTGTCAAGAAAAAGCGTGAACATGTTAATACAGACATTGGATGCACAAGTTGCGGTTCTAATAATACATGCTCTGAAGATTGTGTCTGCAGGGTTCAGTGCATAAGCTGCTCAAAGGCTTGTTATTGCTCAGAAATGTGCACAAATAGACCTTTTCGGAAAGATAAAAAGATTAAAATTGTCAAGACTCAACTTTGTGGGTGGGGTGCAGTGGCAGCTGAATCTATTAGTAAAGGTGATTTTGTAATTGAGTACATCGGTGAAGAGCATAAGAAGGGGGATAATGGATATTTAGTAAATGTTAATAGAATTTTTACCACATTGAAAGCTGGATTTAAAGAAGAAACGGCTCAAGTTCAGTTGAATAATCCTAGTAACCCTAATGTGATAAATGGAGGACGAAGCATGGAGACCAATGAAATTGGGTCCAAGCTGGACAAACCTTGTGGGCCAATTAAAAGGCTTGTTTTAAATAAAGATACAGATGTTATCCTTTCTGAAGATGAGGAAGAGGATATGGGGGGAAAGGAAAATGGGAATTTCATAATTGATTTTAATGAGGGCGGGGGATGGTCAGAATCTCTATTTCATGGGGGTAATTTGATACTTTCGAAGGATGCTGAAAAGATGTCATCTCTTTTGGATGGGTTGAGTGGTGAGGGTTCGATCTTTGATGGTGGGGATTTGCCTTTATCAATTGTTGGTGGTGAATTCAAGATTGATGCAATAAGTTCGTTTGTAGATCTTGAATGGATCAAAAAGTTTGAATTCTTTGTTCCGATTATTCCATATAATGTACTAAGGGTGGCACTTGAAGCAGTGGTGATAAGAATCAGTTCATTTCCATTAATTAAATATGGGCAGTGTGGTTCAGCTATGGGTGTCAATAAAAGTGACGCTTATTCAGATAATAGAGGCAGTCCAATTGGCAGATCGGATGTTTATGAGTTTTTTCCTTTAATTATTTTCTTGTCTATTTCAGTTATCAATGATGCTTTATGTGAACAACGGCTATGGGACATGAAGCACAAAGGCATAACAAATTTTTACATGTGTGAGATTCGGAAAGACTTCACCATTGATGCAACTTTCAAGGGAAACGCCTCACGTTTTCTCAATCATAGTTGTGATCCTAATTGTAACCTAGAAAAATGGCAAGTTGAAGGGGAGACTCGTGTTGGCGTCTTTGCTGCTCGATCTATCAAAGTTGGAGAACCCTTAACATATGATTACCGGTATGCTCATCTCCCTTCTAGCCTATTTGTGCAGTTCGGGCCAGAAGTGAAGTGCCATTGTGGGGCCCAAAACTGTCAAGGCTACCTTGGCACAAAGAGAAAGGCCGCCAAGGCACACCTTTCTTGGGGTTCGAAACGCAGGAGAACTTCAACTGCTACATTGGCTATCATTAGGCAATGAATTGCTGGTCCAGCGATTAATTTTTGGAAGGTTAGCATATTGCTCTCAACTTGAAATGCAATGAATAATTAAAAAAGAGAAAGTGAAAGTGGAAAAAAAAAACCCGGA

Network for GWHGAAZE032188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	593	651	1.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.292
	SRR3591706	second leaf	0.329
	SRR3591707	mature leaf	0.182
	SRR3591708	Shoot apex	4.397
	SRR3591709	Stem	0.378
	SRR3591710	White floral bud	0.847
	SRR3591711	White flower	0.389
	SRR3591712	Green floral bud	0.677
	SRR3591713	Yellow flower	0.194
SRP173429	SRR8316895	Juvenile bud stage	0.945
	SRR8316896	Juvenile bud stage	1.795
	SRR8316897	Juvenile bud stage	1.142
	SRR8316894	Third green stage	0.752
	SRR8316900	Third green stage	1.154
	SRR8316901	Third green stage	1.291
	SRR8316898	Complete white stage	0.119
	SRR8316899	Complete white stage	0.846
	SRR8316903	Complete white stage	0.451
	SRR8316902	Silver flowering stage	0.214
	SRR8316904	Silver flowering stage	0.412
	SRR8316905	Silver flowering stage	0.203
	SRR8316906	Gold flowering stage	0.249
	SRR8316907	Gold flowering stage	0.817
	SRR8316908	Gold flowering stage	0.163
SRP132670	SRR6706286	Control	0.583
	SRR6706287	Light intensity 50%	0.885
	SRR6706288	Light intensity 20%	0.828
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.758
	CNS0095593	Slightly white alabastrum(diploid) 2	1.910
	CNS0095594	Slightly white alabastrum(diploid) 3	1.158
	CNS0095595	Whole white alabastrum(diploid) 2	1.637
	CNS0095596	Whole white alabastrum(diploid) 3	1.330
	CNS0095597	Whole white alabastrum(diploid) 4	1.515
	CNS0095598	Silvery flower (diploied) 1	1.232
	CNS0095599	Silvery flower (diploied) 2	1.583
	CNS0095600	Silvery flower (diploied) 3	0.803
	CNS0095601	Golden flower (diploid) 1	0.988
	CNS0095602	Golden flower (diploid) 2	0.740
	CNS0095603	Golden flower (diploid) 3	0.870
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.840
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.450
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.009
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.187
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.273
	CNS0095610	Silvery flower (tetraploid) 1	0.688
	CNS0095611	Silvery flower (tetraploid) 2	0.709
	CNS0095612	Silvery flower (tetraploid) 3	0.740
	CNS0095613	Golden flower (tetraploid) 1	0.300
	CNS0095614	Golden flower (tetraploid) 2	0.438
	CNS0095615	Golden flower (tetraploid) 3	0.273
CRA001975	CRR073297	Stem 1	1.146
	CRR073298	Stem 2	0.991
	CRR073299	Stem 3	0.982
	CRR073300	Leaf 1	0.914
	CRR073301	Leaf 2	0.580
	CRR073302	Leaf 3	0.093
	CRR073303	Juvenile bud 1	0.064
	CRR073304	Juvenile bud 2	0.303
	CRR073305	Juvenile bud 3	0.068
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.130
	CRR073308	Third green 3	0.031
	CRR073309	Second white 1	0.007
	CRR073310	Second white 2	0.016
	CRR073311	Second white 3	0.080
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.091
	CRR073315	Gold flowering 1	0.022
	CRR073316	Gold flowering 2	0.496
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.915
	CRR073319	Tawny withering 2	1.142
	CRR073320	Tawny withering 3	0.609