Gene detail

Detail information of GWHGAAZE032195

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009345904.1	1.1127E-128	PREDICTED: autophagy-related protein 18b-like [Pyrus x bretschneideri]
Swissprot	tr\|Q8H1Q8\|AT18B_ARATH	6E-122	Autophagy-related protein 18b
trEMBL	tr\|M5XM33\|M5XM33_PRUPE	1E-128	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26974.1}
TAIR10	AT4G30510.1	3E-94	homolog of yeast autophagy 18 (ATG18) B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72479958	72483302	+
GWHAAZE00000009	mRNA	72479958	72483302	+
GWHAAZE00000009	exon	72479958	72480104	+
GWHAAZE00000009	exon	72481027	72481146	+
GWHAAZE00000009	exon	72481510	72481655	+
GWHAAZE00000009	exon	72482317	72482430	+
GWHAAZE00000009	exon	72482671	72482736	+
GWHAAZE00000009	exon	72483161	72483302	+
GWHAAZE00000009	CDS	72479958	72480104	+
GWHAAZE00000009	CDS	72481027	72481146	+
GWHAAZE00000009	CDS	72481510	72481655	+
GWHAAZE00000009	CDS	72482317	72482430	+
GWHAAZE00000009	CDS	72482671	72482736	+
GWHAAZE00000009	CDS	72483161	72483302	+

Transcript Sequence
>GWHTAAZE032233 TCATTTATCTTTCACTATTATTTTTTCTTCACAGGACTTTGTGCATTTTCCCCGAGTTTGGACGGTTGCTTTTTGGCTCTTCCAGCAAGTACAGCAAAAGGGTCTGTGTTAGTCTACAATGTTTTGGAACTCCATTCACATTGTGAGATAGATGCACATCGCTCACCACTGGCTGCAATAGATCTTTCTTCAAATGGGATGTACATTGCAACAGCATCTGAACAGGGGACCTTAATTAGAGTACATCTTGTTTCTGAAGCAACTAAGTCTTACAGTTTCAGAAGGGGGACATATCCATCAACCATATTTTCCTTGTCATTTGGGCCATCGATGGAACTTCCGGATATTCTTGTGGCCTCGAGCTCTTCTGGTTCTGTGCATGCTTTCTTTCTAGGGTTTGCCCTAAGTCAAAGAAGCAGAAGATCAAGTAGTTTTTTGGGATCAATAATACCTGATTCTGTTAGTGATGCATTGGACCCAACTCATCACCATGTACTTCATAATGCTGTTCCTCCTGGTGTCAAAAGCTATGCAGTTGTTCGCAAAGTAGAGAAAGTTGCCGAGACATCCACATTGGAATCTATGGCATATAGAGCAACTATATCAATAATCACTTACAGTGGCTACTTCCAAGAGTACATCTCAAGCATTAACCATCGGAATGAGTCTTTGTGGACTTTGGATCGCGAATTTAATCTGCTAACAGAGATAGTAGATAAAGCCGTTGTCTTATGA

Network for GWHGAAZE032195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17908	WIPI1_2, ATG18	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.756
	SRR3591706	second leaf	12.400
	SRR3591707	mature leaf	12.513
	SRR3591708	Shoot apex	17.759
	SRR3591709	Stem	24.764
	SRR3591710	White floral bud	21.444
	SRR3591711	White flower	36.423
	SRR3591712	Green floral bud	14.237
	SRR3591713	Yellow flower	51.775
SRP173429	SRR8316895	Juvenile bud stage	5.667
	SRR8316896	Juvenile bud stage	9.000
	SRR8316897	Juvenile bud stage	3.109
	SRR8316894	Third green stage	3.643
	SRR8316900	Third green stage	6.923
	SRR8316901	Third green stage	8.723
	SRR8316898	Complete white stage	4.664
	SRR8316899	Complete white stage	13.579
	SRR8316903	Complete white stage	11.625
	SRR8316902	Silver flowering stage	9.325
	SRR8316904	Silver flowering stage	10.687
	SRR8316905	Silver flowering stage	4.060
	SRR8316906	Gold flowering stage	16.705
	SRR8316907	Gold flowering stage	17.731
	SRR8316908	Gold flowering stage	15.828
SRP132670	SRR6706286	Control	4.536
	SRR6706287	Light intensity 50%	4.706
	SRR6706288	Light intensity 20%	5.059
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.731
	CNS0095593	Slightly white alabastrum(diploid) 2	9.086
	CNS0095594	Slightly white alabastrum(diploid) 3	7.129
	CNS0095595	Whole white alabastrum(diploid) 2	5.244
	CNS0095596	Whole white alabastrum(diploid) 3	5.486
	CNS0095597	Whole white alabastrum(diploid) 4	6.267
	CNS0095598	Silvery flower (diploied) 1	14.225
	CNS0095599	Silvery flower (diploied) 2	11.485
	CNS0095600	Silvery flower (diploied) 3	14.605
	CNS0095601	Golden flower (diploid) 1	11.607
	CNS0095602	Golden flower (diploid) 2	13.436
	CNS0095603	Golden flower (diploid) 3	12.148
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.834
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.697
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.912
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.659
	CNS0095610	Silvery flower (tetraploid) 1	16.318
	CNS0095611	Silvery flower (tetraploid) 2	13.724
	CNS0095612	Silvery flower (tetraploid) 3	15.041
	CNS0095613	Golden flower (tetraploid) 1	12.821
	CNS0095614	Golden flower (tetraploid) 2	12.880
	CNS0095615	Golden flower (tetraploid) 3	16.187
CRA001975	CRR073297	Stem 1	6.170
	CRR073298	Stem 2	5.331
	CRR073299	Stem 3	2.297
	CRR073300	Leaf 1	3.194
	CRR073301	Leaf 2	5.124
	CRR073302	Leaf 3	4.587
	CRR073303	Juvenile bud 1	3.429
	CRR073304	Juvenile bud 2	2.945
	CRR073305	Juvenile bud 3	2.755
	CRR073306	Third green 1	2.003
	CRR073307	Third green 2	2.824
	CRR073308	Third green 3	2.083
	CRR073309	Second white 1	5.498
	CRR073310	Second white 2	4.663
	CRR073311	Second white 3	4.263
	CRR073312	Silver flowering 1	3.959
	CRR073313	Silver flowering 2	3.581
	CRR073314	Silver flowering 3	4.918
	CRR073315	Gold flowering 1	7.559
	CRR073316	Gold flowering 2	11.454
	CRR073317	Gold flowering 3	8.548
	CRR073318	Tawny withering 1	5.963
	CRR073319	Tawny withering 2	3.947
	CRR073320	Tawny withering 3	5.449