Detail information of GWHGAAZE032215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02905.10unnamed protein product [Coffea canephora]
COGYP_001958273.12E-23hypothetical protein Aasi_1217
Swissprottr|Q6KAE5|XB32_ORYSJ0Probable E3 ubiquitin-protein ligase XBOS32
trEMBLtr|A0A068U2X4|A0A068U2X4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP02905.1}
TAIR10AT5G57740.12E-174XB3 ortholog 2 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7288165172887522-
GWHAAZE00000009mRNA7288165172887522-
GWHAAZE00000009exon7288702072887522-
GWHAAZE00000009exon7288636572886424-
GWHAAZE00000009exon7288619672886267-
GWHAAZE00000009exon7288590572886080-
GWHAAZE00000009exon7288564472885804-
GWHAAZE00000009exon7288468672884744-
GWHAAZE00000009exon7288455372884599-
GWHAAZE00000009exon7288401972884159-
GWHAAZE00000009exon7288316472883258-
GWHAAZE00000009exon7288165172882189-
GWHAAZE00000009five_prime_UTR7288721572887522-
GWHAAZE00000009CDS7288702072887214-
GWHAAZE00000009CDS7288636572886424-
GWHAAZE00000009CDS7288619672886267-
GWHAAZE00000009CDS7288590572886080-
GWHAAZE00000009CDS7288564472885804-
GWHAAZE00000009CDS7288468672884744-
GWHAAZE00000009CDS7288455372884599-
GWHAAZE00000009CDS7288401972884159-
GWHAAZE00000009CDS7288316472883258-
GWHAAZE00000009CDS7288165172882189-
Transcript Sequence

Network for GWHGAAZE032215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_220811.30E-07
PF12796.8Ank_2882092.60E-16
PF13857.7Ank_52232634.00E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.092
SRR3591706second leaf19.976
SRR3591707mature leaf12.927
SRR3591708Shoot apex28.379
SRR3591709Stem50.571
SRR3591710White floral bud91.070
SRR3591711White flower39.085
SRR3591712Green floral bud44.811
SRR3591713Yellow flower35.893
SRP173429 SRR8316895Juvenile bud stage 19.123
SRR8316896Juvenile bud stage 25.744
SRR8316897Juvenile bud stage 13.595
SRR8316894Third green stage 9.219
SRR8316900Third green stage 34.905
SRR8316901Third green stage 34.084
SRR8316898Complete white stage 21.027
SRR8316899Complete white stage 50.926
SRR8316903Complete white stage 33.115
SRR8316902Silver flowering stage11.715
SRR8316904Silver flowering stage17.837
SRR8316905Silver flowering stage7.530
SRR8316906Gold flowering stage 28.459
SRR8316907Gold flowering stage 24.564
SRR8316908Gold flowering stage 23.174
SRP132670SRR6706286Control29.365
SRR6706287Light intensity 50%30.415
SRR6706288Light intensity 20%28.978
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.779
CNS0095593Slightly white alabastrum(diploid) 226.180
CNS0095594Slightly white alabastrum(diploid) 326.570
CNS0095595Whole white alabastrum(diploid) 232.553
CNS0095596Whole white alabastrum(diploid) 335.577
CNS0095597Whole white alabastrum(diploid) 440.577
CNS0095598Silvery flower (diploied) 121.737
CNS0095599Silvery flower (diploied) 224.068
CNS0095600Silvery flower (diploied) 334.810
CNS0095601Golden flower (diploid) 121.535
CNS0095602Golden flower (diploid) 228.594
CNS0095603Golden flower (diploid) 326.337
CNS0095604Slightly white alabastrum(tetraploid) 141.009
CNS0095605Slightly white alabastrum(tetraploid) 237.681
CNS0095606Slightly white alabastrum(tetraploid) 338.664
CNS0095607Whole white alabastrum(tetraploid) 151.462
CNS0095608Whole white alabastrum(tetraploid) 256.180
CNS0095609Whole white alabastrum(tetraploid) 340.993
CNS0095610Silvery flower (tetraploid) 132.097
CNS0095611Silvery flower (tetraploid) 238.815
CNS0095612Silvery flower (tetraploid) 365.051
CNS0095613Golden flower (tetraploid) 129.375
CNS0095614Golden flower (tetraploid) 231.534
CNS0095615Golden flower (tetraploid) 351.194
CRA001975CRR073297Stem 127.824
CRR073298Stem 226.733
CRR073299Stem 316.640
CRR073300Leaf 140.602
CRR073301Leaf 236.061
CRR073302Leaf 324.251
CRR073303Juvenile bud 131.512
CRR073304Juvenile bud 234.617
CRR073305Juvenile bud 335.970
CRR073306Third green 134.854
CRR073307Third green 226.847
CRR073308Third green 333.105
CRR073309Second white 115.752
CRR073310Second white 223.369
CRR073311Second white 326.027
CRR073312Silver flowering 136.157
CRR073313Silver flowering 232.780
CRR073314Silver flowering 332.420
CRR073315Gold flowering 115.080
CRR073316Gold flowering 211.388
CRR073317Gold flowering 311.021
CRR073318Tawny withering 139.477
CRR073319Tawny withering 234.382
CRR073320Tawny withering 339.780