Detail information of GWHGAAZE032216


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002324500.21.6745E-128zinc finger family protein [Populus trichocarpa]
Swissprottr|Q9ZV53|ATL49_ARATH5E-80Putative RING-H2 finger protein ATL49
trEMBLtr|B9IM58|B9IM58_POPTR6E-129Zinc finger family protein {ECO:0000313|EMBL:EEF03065.2}
TAIR10AT2G18650.15E-60RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7289982572900766+
GWHAAZE00000009mRNA7289982572900766+
GWHAAZE00000009exon7289982572900413+
GWHAAZE00000009exon7290045672900766+
GWHAAZE00000009CDS7289982572900413+
GWHAAZE00000009CDS7290045672900766+
Transcript Sequence

Network for GWHGAAZE032216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21261694.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.136
SRR3591706second leaf2.982
SRR3591707mature leaf0.838
SRR3591708Shoot apex2.812
SRR3591709Stem1.001
SRR3591710White floral bud3.159
SRR3591711White flower0.516
SRR3591712Green floral bud7.427
SRR3591713Yellow flower0.003
SRP173429 SRR8316895Juvenile bud stage 2.018
SRR8316896Juvenile bud stage 1.621
SRR8316897Juvenile bud stage 0.817
SRR8316894Third green stage 2.193
SRR8316900Third green stage 6.938
SRR8316901Third green stage 4.247
SRR8316898Complete white stage 1.255
SRR8316899Complete white stage 6.029
SRR8316903Complete white stage 2.094
SRR8316902Silver flowering stage0.319
SRR8316904Silver flowering stage0.443
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.004
SRP132670SRR6706286Control2.440
SRR6706287Light intensity 50%2.726
SRR6706288Light intensity 20%2.813
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.135
CNS0095593Slightly white alabastrum(diploid) 21.293
CNS0095594Slightly white alabastrum(diploid) 31.518
CNS0095595Whole white alabastrum(diploid) 21.235
CNS0095596Whole white alabastrum(diploid) 31.918
CNS0095597Whole white alabastrum(diploid) 41.554
CNS0095598Silvery flower (diploied) 10.218
CNS0095599Silvery flower (diploied) 20.179
CNS0095600Silvery flower (diploied) 30.519
CNS0095601Golden flower (diploid) 10.836
CNS0095602Golden flower (diploid) 20.797
CNS0095603Golden flower (diploid) 30.439
CNS0095604Slightly white alabastrum(tetraploid) 13.890
CNS0095605Slightly white alabastrum(tetraploid) 23.223
CNS0095606Slightly white alabastrum(tetraploid) 310.987
CNS0095607Whole white alabastrum(tetraploid) 12.876
CNS0095608Whole white alabastrum(tetraploid) 22.095
CNS0095609Whole white alabastrum(tetraploid) 311.813
CNS0095610Silvery flower (tetraploid) 10.419
CNS0095611Silvery flower (tetraploid) 20.361
CNS0095612Silvery flower (tetraploid) 31.715
CNS0095613Golden flower (tetraploid) 10.088
CNS0095614Golden flower (tetraploid) 20.341
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.083
CRR073298Stem 22.927
CRR073299Stem 30.831
CRR073300Leaf 12.901
CRR073301Leaf 22.845
CRR073302Leaf 32.830
CRR073303Juvenile bud 13.437
CRR073304Juvenile bud 22.888
CRR073305Juvenile bud 32.684
CRR073306Third green 10.972
CRR073307Third green 20.702
CRR073308Third green 30.427
CRR073309Second white 10.143
CRR073310Second white 20.143
CRR073311Second white 30.047
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.115
CRR073316Gold flowering 21.719
CRR073317Gold flowering 32.172
CRR073318Tawny withering 13.695
CRR073319Tawny withering 23.085
CRR073320Tawny withering 33.644