Detail information of GWHGAAZE032219


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787468.10PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Nicotiana sylvestris]
COGYP_005071944.19E-19cyclic nucleotide-binding protein
Swissprottr|Q8L7Z0|CNG17_ARATH0Probable cyclic nucleotide-gated ion channel 17
trEMBLtr|K4CBC2|K4CBC2_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g006510.2.1}
TAIR10AT4G30360.12E-143cyclic nucleotide-gated channel 17

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7297462572978063+
GWHAAZE00000009mRNA7297462572978063+
GWHAAZE00000009exon7297462572974708+
GWHAAZE00000009exon7297636972976605+
GWHAAZE00000009exon7297734772978063+
GWHAAZE00000009CDS7297462572974708+
GWHAAZE00000009CDS7297636972976605+
GWHAAZE00000009CDS7297734772978063+
Transcript Sequence

Network for GWHGAAZE032219

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0129


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00027.30cNMP_binding1332197.50E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.553
SRR3591706second leaf15.519
SRR3591707mature leaf19.538
SRR3591708Shoot apex20.957
SRR3591709Stem21.145
SRR3591710White floral bud24.541
SRR3591711White flower25.762
SRR3591712Green floral bud23.977
SRR3591713Yellow flower19.560
SRP173429 SRR8316895Juvenile bud stage 10.762
SRR8316896Juvenile bud stage 14.151
SRR8316897Juvenile bud stage 5.833
SRR8316894Third green stage 7.090
SRR8316900Third green stage 18.910
SRR8316901Third green stage 18.269
SRR8316898Complete white stage 9.650
SRR8316899Complete white stage 27.170
SRR8316903Complete white stage 14.771
SRR8316902Silver flowering stage8.360
SRR8316904Silver flowering stage14.112
SRR8316905Silver flowering stage6.544
SRR8316906Gold flowering stage 22.435
SRR8316907Gold flowering stage 20.756
SRR8316908Gold flowering stage 25.477
SRP132670SRR6706286Control26.867
SRR6706287Light intensity 50%23.860
SRR6706288Light intensity 20%26.208
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.130
CNS0095593Slightly white alabastrum(diploid) 213.415
CNS0095594Slightly white alabastrum(diploid) 310.337
CNS0095595Whole white alabastrum(diploid) 29.478
CNS0095596Whole white alabastrum(diploid) 311.283
CNS0095597Whole white alabastrum(diploid) 411.634
CNS0095598Silvery flower (diploied) 115.086
CNS0095599Silvery flower (diploied) 211.956
CNS0095600Silvery flower (diploied) 323.045
CNS0095601Golden flower (diploid) 115.257
CNS0095602Golden flower (diploid) 220.504
CNS0095603Golden flower (diploid) 319.330
CNS0095604Slightly white alabastrum(tetraploid) 113.971
CNS0095605Slightly white alabastrum(tetraploid) 212.372
CNS0095606Slightly white alabastrum(tetraploid) 329.227
CNS0095607Whole white alabastrum(tetraploid) 18.666
CNS0095608Whole white alabastrum(tetraploid) 27.506
CNS0095609Whole white alabastrum(tetraploid) 318.483
CNS0095610Silvery flower (tetraploid) 124.952
CNS0095611Silvery flower (tetraploid) 223.607
CNS0095612Silvery flower (tetraploid) 324.191
CNS0095613Golden flower (tetraploid) 113.904
CNS0095614Golden flower (tetraploid) 220.116
CNS0095615Golden flower (tetraploid) 322.999
CRA001975CRR073297Stem 130.816
CRR073298Stem 229.026
CRR073299Stem 331.472
CRR073300Leaf 136.013
CRR073301Leaf 234.836
CRR073302Leaf 332.449
CRR073303Juvenile bud 143.802
CRR073304Juvenile bud 232.929
CRR073305Juvenile bud 346.598
CRR073306Third green 121.906
CRR073307Third green 220.948
CRR073308Third green 325.035
CRR073309Second white 129.722
CRR073310Second white 224.850
CRR073311Second white 326.396
CRR073312Silver flowering 121.857
CRR073313Silver flowering 220.168
CRR073314Silver flowering 319.501
CRR073315Gold flowering 121.606
CRR073316Gold flowering 225.590
CRR073317Gold flowering 324.722
CRR073318Tawny withering 135.043
CRR073319Tawny withering 221.797
CRR073320Tawny withering 323.130